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This is the development version of GENIE3; for the stable release version, see GENIE3.
Bioconductor version: Development (3.18)
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts
Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>
Citation (from within R,
enter citation("GENIE3")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("GENIE3")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology |
Version | 1.23.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (5.5 years) |
License | GPL (>= 2) |
Depends | |
Imports | stats, reshape2, dplyr |
LinkingTo | |
Suggests | knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | BioNERO, MetNet |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | GENIE3_1.23.0.zip (64-bit only) |
macOS Binary (x86_64) | GENIE3_1.23.0.tgz |
macOS Binary (arm64) | GENIE3_1.23.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GENIE3 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GENIE3 |
Bioc Package Browser | https://code.bioconductor.org/browse/GENIE3/ |
Package Short Url | https://bioconductor.org/packages/GENIE3/ |
Package Downloads Report | Download Stats |
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