GENIE3
This is the development version of GENIE3; for the stable release version, see GENIE3.
GEne Network Inference with Ensemble of trees
Bioconductor version: Development (3.21)
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts
Maintainer: Van Anh Huynh-Thu <vahuynh at uliege.be>
Citation (from within R, enter
citation("GENIE3")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GENIE3")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GENIE3")| GENIE3 | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology |
| Version | 1.29.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | stats, reshape2, dplyr |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | BioNERO, MetNet, bulkAnalyseR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GENIE3_1.29.0.tar.gz |
| Windows Binary (x86_64) | GENIE3_1.29.0.zip (64-bit only) |
| macOS Binary (x86_64) | GENIE3_1.29.0.tgz |
| macOS Binary (arm64) | GENIE3_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GENIE3 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GENIE3 |
| Bioc Package Browser | https://code.bioconductor.org/browse/GENIE3/ |
| Package Short Url | https://bioconductor.org/packages/GENIE3/ |
| Package Downloads Report | Download Stats |