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ExiMiR

This is the development version of ExiMiR; for the stable release version, see ExiMiR.

R functions for the normalization of Exiqon miRNA array data


Bioconductor version: Development (3.19)

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Citation (from within R, enter citation("ExiMiR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExiMiR")
Description of ExiMiR PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel
Version 2.45.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-2
Depends R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
System Requirements
URL
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Suggests mirna10cdf
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExiMiR_2.45.0.tar.gz
Windows Binary ExiMiR_2.45.0.zip
macOS Binary (x86_64) ExiMiR_2.45.0.tgz
macOS Binary (arm64) ExiMiR_2.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExiMiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExiMiR
Bioc Package Browser https://code.bioconductor.org/browse/ExiMiR/
Package Short Url https://bioconductor.org/packages/ExiMiR/
Package Downloads Report Download Stats