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DNAshapeR

This is the development version of DNAshapeR; for the stable release version, see DNAshapeR.

High-throughput prediction of DNA shape features


Bioconductor version: Development (3.19)

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Citation (from within R, enter citation("DNAshapeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DNAshapeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAshapeR")
DNAshapeR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNA3DStructure, Software, StructuralPrediction
Version 1.31.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends R (>= 3.4), GenomicRanges
Imports Rcpp (>= 0.12.1), Biostrings, fields
System Requirements
URL
See More
Suggests AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DNAshapeR_1.31.0.tar.gz
Windows Binary DNAshapeR_1.31.0.zip (64-bit only)
macOS Binary (x86_64) DNAshapeR_1.31.0.tgz
macOS Binary (arm64) DNAshapeR_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNAshapeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DNAshapeR
Bioc Package Browser https://code.bioconductor.org/browse/DNAshapeR/
Package Short Url https://bioconductor.org/packages/DNAshapeR/
Package Downloads Report Download Stats