|
|
|
|
|
|
|
This is the development version of ChIPXpress; for the stable release version, see ChIPXpress.
Bioconductor version: Development (3.18)
ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.
Author: George Wu
Maintainer: George Wu <georgetwu at gmail.com>
Citation (from within R,
enter citation("ChIPXpress")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("ChIPXpress")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | ChIPSeq, ChIPchip, Software |
Version | 1.45.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (10.5 years) |
License | GPL(>=2) |
Depends | R (>= 2.10), ChIPXpressData |
Imports | Biobase, GEOquery, frma, affy, bigmemory, biganalytics |
LinkingTo | |
Suggests | mouse4302frmavecs, mouse4302.db, mouse4302cdf, RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | ChIPXpress_1.45.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/ChIPXpress |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPXpress |
Bioc Package Browser | https://code.bioconductor.org/browse/ChIPXpress/ |
Package Short Url | https://bioconductor.org/packages/ChIPXpress/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: