BiocSet
This is the development version of BiocSet; for the stable release version, see BiocSet.
Representing Different Biological Sets
Bioconductor version: Development (3.20)
BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.
Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], LluĂs Revilla Sancho [ctb]
Maintainer: Kayla Morrell <kayla.morrell16 at gmail.com>
citation("BiocSet")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BiocSet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocSet")
BiocSet: Representing Element Sets in the Tidyverse | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GO, GeneExpression, KEGG, Software |
Version | 1.19.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.6), dplyr |
Imports | methods, tibble, utils, rlang, plyr, S4Vectors, BiocIO, AnnotationDbi, KEGGREST, ontologyIndex, tidyr |
System Requirements | |
URL |
See More
Suggests | GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | RegEnrich |
Imports Me | CBEA, sparrow |
Suggests Me | dearseq |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BiocSet_1.19.0.tar.gz |
Windows Binary | BiocSet_1.19.0.zip |
macOS Binary (x86_64) | BiocSet_1.19.0.tgz |
macOS Binary (arm64) | BiocSet_1.19.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BiocSet |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocSet |
Bioc Package Browser | https://code.bioconductor.org/browse/BiocSet/ |
Package Short Url | https://bioconductor.org/packages/BiocSet/ |
Package Downloads Report | Download Stats |