BEAT

This is the development version of BEAT; for the stable release version, see BEAT.

BEAT - BS-Seq Epimutation Analysis Toolkit

Bioconductor version: Development (3.21)

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Citation (from within R, enter citation("BEAT")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")

Analysing single-cell BS-Seq data with the "BEAT" package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version	1.45.0
In Bioconductor since	BioC 2.14 (R-3.1) (10.5 years)
License	LGPL (>= 3.0)
Depends	R (>= 2.13.0)
Imports	GenomicRanges, ShortRead, Biostrings, BSgenome
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BEAT_1.45.0.tar.gz
Windows Binary (x86_64)	BEAT_1.45.0.zip (64-bit only)
macOS Binary (x86_64)	BEAT_1.45.0.tgz
macOS Binary (arm64)	BEAT_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BEAT
Bioc Package Browser	https://code.bioconductor.org/browse/BEAT/
Package Short Url	https://bioconductor.org/packages/BEAT/
Package Downloads Report	Download Stats