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This is the development version of uncoverappLib; for the stable release version, see uncoverappLib.

Interactive graphical application for clinical assessment of sequence coverage at the base-pair level

Bioconductor version: Development (3.19)

a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.

Author: Emanuela Iovino [cre, aut], Tommaso Pippucci [aut]

Maintainer: Emanuela Iovino <emanuela.iovino at>

Citation (from within R, enter citation("uncoverappLib")):


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Reference Manual PDF


biocViews Annotation, Coverage, Software, Visualization
Version 1.13.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License MIT + file LICENSE
Imports markdown, shiny, shinyjs, shinyBS, shinyWidgets, shinycssloaders, DT, Gviz, Homo.sapiens, openxlsx, condformat, stringr,, TxDb.Hsapiens.UCSC.hg38.knownGene, BiocFileCache, rappdirs, TxDb.Hsapiens.UCSC.hg19.knownGene, rlist, utils, S4Vectors, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, OrganismDbi, processx, Rsamtools, GenomicRanges
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