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This is the development version of atSNP; for the stable release version, see atSNP.

Affinity test for identifying regulatory SNPs

Bioconductor version: Development (3.19)

atSNP performs affinity tests of motif matches with the SNP or the reference genomes and SNP-led changes in motif matches.

Author: Chandler Zuo [aut], Sunyoung Shin [aut, cre], Sunduz Keles [aut]

Maintainer: Sunyoung Shin <sunyoung.shin at>

Citation (from within R, enter citation("atSNP")):


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Reference Manual PDF


biocViews ChIPSeq, GenomeAnnotation, MotifAnnotation, Software, Visualization
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-2
Depends R (>= 3.6)
Imports BSgenome, BiocFileCache, BiocParallel, Rcpp, data.table, ggplot2, grDevices, graphics, grid, motifStack, rappdirs, stats, testthat, utils, lifecycle
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