DOI: 10.18129/B9.bioc.topGO  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see topGO.

Enrichment Analysis for Gene Ontology

Bioconductor version: 3.16

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author: Adrian Alexa, Jorg Rahnenfuhrer

Maintainer: Adrian Alexa <adrian.alexa at>

Citation (from within R, enter citation("topGO")):


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PDF R Script topGO
PDF   Reference Manual


biocViews Microarray, Software, Visualization
Version 2.50.0
In Bioconductor since BioC 2.0 (R-2.5) (16 years)
License LGPL
Depends R (>= 2.10.0), methods, BiocGenerics(>= 0.13.6), graph(>= 1.14.0), Biobase(>= 2.0.0), GO.db(>= 2.3.0), AnnotationDbi(>= 1.7.19), SparseM (>= 0.73)
Imports lattice, matrixStats, DBI
Suggests ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest
Depends On Me BgeeDB, ccTutorial, cellTree, compEpiTools, EGSEA, ideal, maEndToEnd, moanin, tRanslatome
Imports Me APL, BioMM, cellity, consICA, ExpHunterSuite, FoldGO, GOSim, GRaNIE, OmaDB, pcaExplorer, psygenet2r, transcriptogramer, ViSEAGO
Suggests Me FGNet, geva, IntramiRExploreR, miRNAtap, pareg, Ringo
Links To Me
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Source Package topGO_2.50.0.tar.gz
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