DOI: 10.18129/B9.bioc.cellity  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cellity.

Quality Control for Single-Cell RNA-seq Data

Bioconductor version: 3.16

A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.

Author: Tomislav Illicic, Davis McCarthy

Maintainer: Tomislav Ilicic <ti243 at cam.ac.uk>

Citation (from within R, enter citation("cellity")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An introduction to the cellity package
PDF   Reference Manual
Text   NEWS


biocViews DimensionReduction, GeneExpression, ImmunoOncology, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, SupportVectorMachine, Transcriptomics, Visualization
Version 1.26.0
In Bioconductor since BioC 3.3 (R-3.3) (7 years)
License GPL (>= 2)
Depends R (>= 3.3)
Imports AnnotationDbi, e1071, ggplot2, graphics, grDevices, grid, mvoutlier, org.Hs.eg.db, org.Mm.eg.db, robustbase, stats, topGO, utils
Suggests BiocStyle, caret, knitr, testthat, rmarkdown
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellity_1.26.0.tar.gz
Windows Binary cellity_1.26.0.zip
macOS Binary (x86_64) cellity_1.26.0.tgz
macOS Binary (arm64) cellity_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellity
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellity
Bioc Package Browser https://code.bioconductor.org/browse/cellity/
Package Short Url https://bioconductor.org/packages/cellity/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: