DOI: 10.18129/B9.bioc.OmaDB  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see OmaDB.

R wrapper for the OMA REST API

Bioconductor version: 3.16

A package for the orthology prediction data download from OMA database.

Author: Klara Kaleb

Maintainer: Klara Kaleb <klara.kaleb18 at>, Adrian Altenhoff <adrian.altenhoff at>

Citation (from within R, enter citation("OmaDB")):


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if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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HTML R Script Exploring Hierarchical orthologous groups with OmaDB
HTML R Script Exploring Taxonomic trees with OmaDB
HTML R Script Get started with OmaDB
HTML R Script Sequence Mapping with OmaDB
PDF   Reference Manual
Text   NEWS


biocViews Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software
Version 2.14.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License GPL-3
Depends R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4)
Imports utils, ape, Biostrings, GenomicRanges, IRanges, methods, topGO, jsonlite
Suggests knitr, rmarkdown, testthat
Depends On Me
Imports Me PhyloProfile
Suggests Me orthogene
Links To Me
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Source Package OmaDB_2.14.0.tar.gz
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