Back to Workflows build report for BioC 3.19

This page was generated on 2024-04-30 14:00:12 -0400 (Tue, 30 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4752
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4518
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 28/30HostnameOS / ArchINSTALLBUILD
spicyWorkflow 1.3.1  (landing page)
SOMS Maintainer
Snapshot Date: 2024-04-30 07:45:02 -0400 (Tue, 30 Apr 2024)
git_url: https://git.bioconductor.org/packages/spicyWorkflow
git_branch: devel
git_last_commit: 5ed0df8
git_last_commit_date: 2024-01-23 23:45:48 -0400 (Tue, 23 Jan 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for spicyWorkflow on lconway


To the developers/maintainers of the spicyWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: spicyWorkflow
Version: 1.3.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
StartedAt: 2024-04-30 08:05:40 -0400 (Tue, 30 Apr 2024)
EndedAt: 2024-04-30 08:09:10 -0400 (Tue, 30 Apr 2024)
EllapsedTime: 209.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
###
##############################################################################
##############################################################################


* checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK
* preparing ‘spicyWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘spicyWorkflow.Rmd’ using rmarkdown

Quitting from lines  at lines 202-213 [segment] (spicyWorkflow.Rmd)
Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics:
object 'useCellMarkers' not found
--- failed re-building ‘spicyWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘spicyWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted