Back to Workflows build report for BioC 3.16

This page was generated on 2023-02-03 14:00:08 -0500 (Fri, 03 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4511
palomino4Windows Server 2022 Datacenterx644.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" 4289
lconwaymacOS 12.5.1 Montereyx86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4318
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for cytofWorkflow on lconway


To the developers/maintainers of the cytofWorkflow package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 8/28HostnameOS / ArchINSTALLBUILD
cytofWorkflow 1.22.0  (landing page)
Mark D. Robinson
Snapshot Date: 2023-02-03 10:45:01 -0500 (Fri, 03 Feb 2023)
git_url: https://git.bioconductor.org/packages/cytofWorkflow
git_branch: RELEASE_3_16
git_last_commit: 1cfbdf1
git_last_commit_date: 2022-11-01 10:33:31 -0500 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  

Summary

Package: cytofWorkflow
Version: 1.22.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
StartedAt: 2023-02-03 11:02:51 -0500 (Fri, 03 Feb 2023)
EndedAt: 2023-02-03 11:06:09 -0500 (Fri, 03 Feb 2023)
EllapsedTime: 198.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
###
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* checking for file ‘cytofWorkflow/DESCRIPTION’ ... OK
* preparing ‘cytofWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cytofWorkflow.Rmd’ using rmarkdown
trying URL 'http://imlspenticton.uzh.ch/robinson_lab/cytofWorkflow/PBMC8_metadata.xlsx'
Quitting from lines 189-195 (cytofWorkflow.Rmd) 
Error: processing vignette 'cytofWorkflow.Rmd' failed with diagnostics:
cannot open URL 'http://imlspenticton.uzh.ch/robinson_lab/cytofWorkflow/PBMC8_metadata.xlsx'
--- failed re-building ‘cytofWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘cytofWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted