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This page was generated on 2024-05-07 11:32:49 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2284/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
xcms 4.2.0  (landing page)
Steffen Neumann
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/xcms
git_branch: RELEASE_3_19
git_last_commit: c84c34c
git_last_commit_date: 2024-04-30 10:13:53 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for xcms on kjohnson3


To the developers/maintainers of the xcms package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: xcms
Version: 4.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
StartedAt: 2024-05-06 19:26:53 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 19:27:50 -0400 (Mon, 06 May 2024)
EllapsedTime: 56.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
###
##############################################################################
##############################################################################


* checking for file ‘xcms/DESCRIPTION’ ... OK
* preparing ‘xcms’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘LC-MS-feature-grouping.Rmd’ using rmarkdown

Quitting from lines  at lines 70-76 [load-data] (LC-MS-feature-grouping.Rmd)
Error: processing vignette 'LC-MS-feature-grouping.Rmd' failed with diagnostics:
there is no package called 'faahKO'
--- failed re-building ‘LC-MS-feature-grouping.Rmd’

--- re-building ‘xcms-direct-injection.Rmd’ using rmarkdown
2024-05-06 19:27:37.325 R[41642:37371016] XType: Using static font registry.
--- finished re-building ‘xcms-direct-injection.Rmd’

--- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown
--- finished re-building ‘xcms-lcms-ms.Rmd’

--- re-building ‘xcms.Rmd’ using rmarkdown

Quitting from lines  at lines 30-37 [init] (xcms.Rmd)
Error: processing vignette 'xcms.Rmd' failed with diagnostics:
there is no package called 'faahKO'
--- failed re-building ‘xcms.Rmd’

SUMMARY: processing the following files failed:
  ‘LC-MS-feature-grouping.Rmd’ ‘xcms.Rmd’

Error: Vignette re-building failed.
Execution halted