Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:49 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2258/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
velociraptor 1.14.0 (landing page) Kevin Rue-Albrecht
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the velociraptor package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: velociraptor |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor |
StartedAt: 2024-05-06 19:24:40 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 19:25:39 -0400 (Mon, 06 May 2024) |
EllapsedTime: 59.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor ### ############################################################################## ############################################################################## * checking for file ‘velociraptor/DESCRIPTION’ ... OK * preparing ‘velociraptor’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘velociraptor.Rmd’ using rmarkdown Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.16.0/velociraptor/1.14.0/env added / updated specs: - python=3.8 The following NEW packages will be INSTALLED: bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h93a5062_5 ca-certificates conda-forge/osx-arm64::ca-certificates-2024.2.2-hf0a4a13_0 libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5 libsqlite conda-forge/osx-arm64::libsqlite-3.45.3-h091b4b1_0 libzlib conda-forge/osx-arm64::libzlib-1.2.13-h53f4e23_5 ncurses conda-forge/osx-arm64::ncurses-6.4.20240210-h078ce10_0 openssl conda-forge/osx-arm64::openssl-3.3.0-h0d3ecfb_0 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/osx-arm64::python-3.8.19-h2469fbe_0_cpython readline conda-forge/osx-arm64::readline-8.2-h92ec313_1 setuptools conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0 tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 24.4.0 Please update conda by running $ conda update -n base -c defaults conda # All requested packages already installed. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.9.0.*, but conda is ignoring the .* and treating it as 1.9.0 WARNING conda.models.version:get_matcher(535): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.8.0.*, but conda is ignoring the .* and treating it as 1.8.0 done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels: - pandas=1.1.2 - tornado=6.0.4 - numpy=1.19.1 - statsmodels=0.12.0 - umap-learn=0.4.6 - kiwisolver=1.2.0 - llvmlite=0.34.0 - matplotlib=3.3.1 - numba=0.51.2 - anndata=0.7.4 - numexpr=2.7.1 - pillow=7.2.0 - stdlib-list=0.6.0 - cffi=1.14.1 Current channels: - https://conda.anaconda.org/bioconda/osx-arm64 - https://conda.anaconda.org/bioconda/noarch - https://conda.anaconda.org/conda-forge/osx-arm64 - https://conda.anaconda.org/conda-forge/noarch - https://repo.anaconda.com/pkgs/main/osx-arm64 - https://repo.anaconda.com/pkgs/main/noarch - https://repo.anaconda.com/pkgs/r/osx-arm64 - https://repo.anaconda.com/pkgs/r/noarch To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Quitting from lines at lines 70-73 [unnamed-chunk-5] (velociraptor.Rmd) Error: processing vignette 'velociraptor.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 1] --- failed re-building ‘velociraptor.Rmd’ SUMMARY: processing the following file failed: ‘velociraptor.Rmd’ Error: Vignette re-building failed. Execution halted