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This page was generated on 2024-05-07 11:32:49 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2220/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ttgsea 1.12.0  (landing page)
Dongmin Jung
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/ttgsea
git_branch: RELEASE_3_19
git_last_commit: 15ca189
git_last_commit_date: 2024-04-30 11:30:06 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for ttgsea on kjohnson3


To the developers/maintainers of the ttgsea package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ttgsea
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ttgsea
StartedAt: 2024-05-06 19:21:21 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 19:21:34 -0400 (Mon, 06 May 2024)
EllapsedTime: 12.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ttgsea
###
##############################################################################
##############################################################################


* checking for file ‘ttgsea/DESCRIPTION’ ... OK
* preparing ‘ttgsea’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ttgsea.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(

Quitting from lines  at lines 90-117 [unnamed-chunk-2] (ttgsea.Rmd)
Error: processing vignette 'ttgsea.Rmd' failed with diagnostics:
ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 30}
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘ttgsea.Rmd’

SUMMARY: processing the following file failed:
  ‘ttgsea.Rmd’

Error: Vignette re-building failed.
Execution halted