Hai Fang
| Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024) |
| git_url: https://git.bioconductor.org/packages/supraHex |
| git_branch: RELEASE_3_19 |
| git_last_commit: 7ffe698 |
| git_last_commit_date: 2024-04-30 10:33:03 -0400 (Tue, 30 Apr 2024) |
| Back to Mac ARM64 build report for BioC 3.19 |
|
This page was generated on 2024-05-07 11:32:46 -0400 (Tue, 07 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2104/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.42.0 (landing page) Hai Fang
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the supraHex package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: supraHex |
| Version: 1.42.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.42.0.tar.gz |
| StartedAt: 2024-05-07 01:20:45 -0400 (Tue, 07 May 2024) |
| EndedAt: 2024-05-07 01:21:10 -0400 (Tue, 07 May 2024) |
| EllapsedTime: 25.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.42.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/supraHex.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.017 | 0.002 | 0.019 | |
| sCompReorder | 0.710 | 0.059 | 0.769 | |
| sDistance | 0.078 | 0.002 | 0.082 | |
| sDmat | 0.077 | 0.001 | 0.079 | |
| sDmatCluster | 0.108 | 0.003 | 0.111 | |
| sDmatMinima | 0.080 | 0.001 | 0.081 | |
| sHexDist | 0.002 | 0.000 | 0.002 | |
| sHexGrid | 0.001 | 0.000 | 0.001 | |
| sHexGridVariant | 0 | 0 | 0 | |
| sHexPolygon | 0.022 | 0.000 | 0.021 | |
| sInitial | 0.004 | 0.001 | 0.004 | |
| sMapOverlay | 0.093 | 0.005 | 0.099 | |
| sNeighAny | 0.004 | 0.000 | 0.004 | |
| sNeighDirect | 0.002 | 0.000 | 0.002 | |
| sPipeline | 0 | 0 | 0 | |
| sTopology | 0.016 | 0.003 | 0.018 | |
| sTrainBatch | 0.014 | 0.001 | 0.015 | |
| sTrainSeq | 0.095 | 0.001 | 0.096 | |
| sTrainology | 0.002 | 0.000 | 0.003 | |
| sWriteData | 0.232 | 0.016 | 0.245 | |
| visColoralpha | 0.001 | 0.000 | 0.001 | |
| visColorbar | 0.006 | 0.001 | 0.007 | |
| visColormap | 0.000 | 0.000 | 0.001 | |
| visCompReorder | 1.127 | 0.216 | 1.343 | |
| visDmatCluster | 0.000 | 0.000 | 0.001 | |
| visDmatHeatmap | 0 | 0 | 0 | |
| visHeatmap | 0.031 | 0.002 | 0.032 | |
| visHeatmapAdv | 0.106 | 0.003 | 0.108 | |
| visHexAnimate | 0 | 0 | 0 | |
| visHexBarplot | 0.220 | 0.017 | 0.237 | |
| visHexComp | 0.074 | 0.003 | 0.075 | |
| visHexGrid | 0.071 | 0.002 | 0.073 | |
| visHexMapping | 0.448 | 0.029 | 0.477 | |
| visHexMulComp | 0.302 | 0.024 | 0.330 | |
| visHexPattern | 0.451 | 0.053 | 0.507 | |
| visKernels | 0.003 | 0.002 | 0.005 | |
| visTreeBSclust | 0 | 0 | 0 | |
| visTreeBootstrap | 0.000 | 0.001 | 0.000 | |
| visVp | 0.004 | 0.001 | 0.006 | |