Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:40 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1483/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
optimalFlow 1.16.0 (landing page) Hristo Inouzhe
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the optimalFlow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: optimalFlow |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:optimalFlow.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings optimalFlow_1.16.0.tar.gz |
StartedAt: 2024-05-06 23:33:20 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 23:34:49 -0400 (Mon, 06 May 2024) |
EllapsedTime: 89.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: optimalFlow.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:optimalFlow.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings optimalFlow_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/optimalFlow.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘optimalFlow/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘optimalFlow’ version ‘1.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘optimalFlow’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘distGaussianCov’ ‘distGaussianMean’ ‘GaussianBarycenters’ ‘wassersteinKBarycenter’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE voteLabelTransfer: no visible binding for global variable ‘cell’ voteLabelTransfer: no visible binding for global variable ‘compound.proportion’ voteLabelTransfer: no visible binding for global variable ‘vote.proportion’ voteTransformation : <anonymous>: no visible binding for global variable ‘cell’ voteTransformation : <anonymous>: no visible binding for global variable ‘simple.proportion’ voteTransformation : <anonymous>: no visible binding for global variable ‘compound.proportion’ Undefined global functions or variables: cell compound.proportion simple.proportion vote.proportion * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed cytoPlot 2.151 1.659 9.012 f1ScoreVoting 1.969 1.054 5.962 cytoPlot3d 1.292 1.383 7.874 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/optimalFlow.Rcheck/00check.log’ for details.
optimalFlow.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL optimalFlow ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘optimalFlow’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optimalFlow)
optimalFlow.Rcheck/optimalFlow-Ex.timings
name | user | system | elapsed | |
costWasserMatchingEllipse | 0.065 | 0.105 | 0.178 | |
cytoPlot | 2.151 | 1.659 | 9.012 | |
cytoPlot3d | 1.292 | 1.383 | 7.874 | |
cytoPlotDatabase | 1.049 | 0.353 | 3.994 | |
cytoPlotDatabase3d | 0.948 | 0.283 | 3.779 | |
estimCovCellGeneral | 0.013 | 0.001 | 0.015 | |
estimationCellBarycenter | 0.001 | 0.000 | 0.001 | |
f1Score | 0.048 | 0.005 | 0.052 | |
f1ScoreVoting | 1.969 | 1.054 | 5.962 | |
labelTransfer | 0 | 0 | 0 | |
labelTransferEllipse | 0.002 | 0.001 | 0.003 | |
optimalFlowClassification | 1.669 | 0.427 | 4.745 | |
optimalFlowTemplates | 0.926 | 0.301 | 3.856 | |
qdaClassification | 0.001 | 0.000 | 0.000 | |
tclustWithInitialization | 0.495 | 0.096 | 0.592 | |
tclust_H | 0.478 | 0.085 | 0.563 | |
trimmedKBarycenter | 0.020 | 0.006 | 0.026 | |
voteLabelTransfer | 0.000 | 0.001 | 0.000 | |
w2dist | 0.001 | 0.000 | 0.000 | |
wasserCostFunction | 0.936 | 0.314 | 3.855 | |