Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:39 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1375/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
multicrispr 1.14.0 (landing page) Aditya Bhagwat
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the multicrispr package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: multicrispr |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:multicrispr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings multicrispr_1.14.0.tar.gz |
StartedAt: 2024-05-06 23:17:56 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 23:20:16 -0400 (Mon, 06 May 2024) |
EllapsedTime: 139.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: multicrispr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:multicrispr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings multicrispr_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/multicrispr.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘multicrispr/DESCRIPTION’ ... OK * this is package ‘multicrispr’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘multicrispr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed index_genome 6.527 0.063 6.599 find_primespacers 4.762 0.352 5.132 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
multicrispr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL multicrispr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘multicrispr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multicrispr)
multicrispr.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(multicrispr) > > test_check("multicrispr") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 5.083 0.374 5.457
multicrispr.Rcheck/multicrispr-Ex.timings
name | user | system | elapsed | |
add_genome_matches | 3.527 | 0.387 | 3.916 | |
add_inverse_strand | 0.606 | 0.020 | 0.641 | |
add_seq | 0.638 | 0.058 | 0.697 | |
add_target_matches | 3.491 | 0.219 | 3.719 | |
bed_to_granges | 0.202 | 0.013 | 0.215 | |
char_to_granges | 0.226 | 0.010 | 0.235 | |
double_flank | 0.643 | 0.011 | 0.655 | |
extend_for_pe | 2.325 | 0.230 | 2.558 | |
extend_pe_to_gg | 0.133 | 0.001 | 0.134 | |
extract_matchranges | 0.818 | 0.048 | 0.866 | |
extract_subranges | 0.147 | 0.001 | 0.151 | |
find_gg | 0.288 | 0.017 | 0.305 | |
find_primespacers | 4.762 | 0.352 | 5.132 | |
find_spacers | 2.868 | 0.224 | 3.102 | |
genes_to_granges | 1.050 | 0.043 | 1.095 | |
gr2dt | 0.051 | 0.001 | 0.052 | |
has_been_indexed | 0 | 0 | 0 | |
index_genome | 6.527 | 0.063 | 6.599 | |
index_targets | 0.666 | 0.068 | 0.736 | |
plot_intervals | 2.175 | 0.162 | 2.339 | |
plot_karyogram | 0.344 | 0.018 | 0.361 | |
score_ontargets | 4.365 | 0.341 | 4.716 | |
up_flank | 2.791 | 0.024 | 2.817 | |
write_ranges | 0.044 | 0.001 | 0.045 | |