Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:37 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1164/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
maSigPro 1.76.0 (landing page) Maria Jose Nueda
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the maSigPro package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: maSigPro |
Version: 1.76.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.76.0.tar.gz |
StartedAt: 2024-05-06 22:42:14 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 22:43:07 -0400 (Mon, 06 May 2024) |
EllapsedTime: 52.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: maSigPro.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.76.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/maSigPro.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘maSigPro/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘maSigPro’ version ‘1.76.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘maSigPro’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
maSigPro.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘maSigPro’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maSigPro)
maSigPro.Rcheck/maSigPro-Ex.timings
name | user | system | elapsed | |
ISOdata | 3.523 | 0.126 | 3.653 | |
ISOdesign | 3.600 | 0.112 | 3.714 | |
IsoModel | 3.792 | 0.106 | 3.909 | |
IsoPlot | 3.480 | 0.106 | 3.587 | |
NBdata | 0.000 | 0.000 | 0.001 | |
NBdesign | 0.000 | 0.001 | 0.001 | |
PlotGroups | 0.011 | 0.000 | 0.012 | |
PlotProfiles | 0.002 | 0.001 | 0.001 | |
PodiumChange | 3.445 | 0.092 | 3.538 | |
T.fit | 1.334 | 0.014 | 1.347 | |
average.rows | 0.001 | 0.000 | 0.000 | |
data.abiotic | 0.002 | 0.001 | 0.002 | |
edesign.abiotic | 0.001 | 0.000 | 0.002 | |
edesignCT | 0.000 | 0.000 | 0.001 | |
edesignDR | 0.000 | 0.001 | 0.001 | |
get.siggenes | 0.632 | 0.004 | 0.636 | |
getDS | 3.599 | 0.091 | 3.691 | |
getDSPatterns | 3.583 | 0.107 | 3.696 | |
i.rank | 0.000 | 0.000 | 0.001 | |
maSigProUsersGuide | 0.002 | 0.002 | 0.004 | |
make.design.matrix | 0.001 | 0.004 | 0.005 | |
p.vector | 0.408 | 0.007 | 0.415 | |
position | 0.000 | 0.000 | 0.001 | |
reg.coeffs | 0 | 0 | 0 | |
see.genes | 0.163 | 0.008 | 0.170 | |
seeDS | 3.471 | 0.098 | 3.568 | |
stepback | 0.007 | 0.000 | 0.007 | |
stepfor | 0.026 | 0.000 | 0.027 | |
suma2Venn | 0.007 | 0.001 | 0.009 | |
tableDS | 3.651 | 0.105 | 3.765 | |
two.ways.stepback | 0.018 | 0.000 | 0.018 | |
two.ways.stepfor | 0.024 | 0.000 | 0.025 | |