Back to Mac ARM64 build report for BioC 3.19 |
|
This page was generated on 2024-05-07 11:32:35 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 873/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gINTomics 1.0.0 (landing page) Angelo Velle
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | ERROR | OK | ||||||||
To the developers/maintainers of the gINTomics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gINTomics |
Version: 1.0.0 |
Command: rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir |
StartedAt: 2024-05-07 02:36:51 -0400 (Tue, 07 May 2024) |
EndedAt: 2024-05-07 02:37:20 -0400 (Tue, 07 May 2024) |
EllapsedTime: 29.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: gINTomics_1.0.0.tgz |
PackageFileSize: 3.849 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gINTomics.buildbin-libdir gINTomics_1.0.0.tar.gz' >>>>>>> * installing *source* package ‘gINTomics’ ... ** using staged installation ** R [2024-05-07 02:36:57] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:36:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:36:57] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Contains 6 files. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:36:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:36:57] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Pandoc version: `3.1.12.3`. [2024-05-07 02:36:57] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-07 02:36:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:36:57] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-07 02:36:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:36:57] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-07 02:36:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:36:57] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-07 02:36:57] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:36:57] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2024-05-07 02:37:03] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:37:03] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:03] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Contains 1 files. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:37:03] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:03] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Pandoc version: `3.1.12.3`. [2024-05-07 02:37:03] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-07 02:37:03] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:03] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-07 02:37:03] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:03] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-07 02:37:03] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:03] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-07 02:37:03] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:03] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-05-07 02:37:11] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:37:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:11] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Contains 1 files. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:37:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:11] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Pandoc version: `3.1.12.3`. [2024-05-07 02:37:11] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-07 02:37:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:11] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-07 02:37:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:11] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-07 02:37:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:11] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-07 02:37:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:11] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-05-07 02:37:18] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:37:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:18] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Contains 1 files. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-05-07 02:37:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:18] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Pandoc version: `3.1.12.3`. [2024-05-07 02:37:18] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-07 02:37:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:18] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-07 02:37:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:18] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-07 02:37:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:18] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-07 02:37:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-07 02:37:18] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (gINTomics)