Back to Mac ARM64 build report for BioC 3.19
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-05-07 11:32:34 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 789/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDRimport 1.2.0  (landing page)
Arkadiusz Gladki
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/gDRimport
git_branch: RELEASE_3_19
git_last_commit: 473f4be
git_last_commit_date: 2024-04-30 11:49:54 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for gDRimport on kjohnson3


To the developers/maintainers of the gDRimport package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: gDRimport
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.2.0.tar.gz
StartedAt: 2024-05-06 21:40:33 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 21:41:42 -0400 (Mon, 06 May 2024)
EllapsedTime: 68.7 seconds
RetCode: 0
Status:   OK  
CheckDir: gDRimport.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/gDRimport.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

gDRimport.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRimport
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘gDRimport’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gDRimport)

Tests output

gDRimport.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(gDRimport)
> 
> test_check("gDRimport")
2024-05-06 21:41:30 Building assay index...
2024-05-06 21:41:30 Joining rowData to assayIndex...
2024-05-06 21:41:31 Joining colData to assayIndex...
2024-05-06 21:41:31 Joining assays to assayIndex...
2024-05-06 21:41:32 Setting assayIndex key...
2024-05-06 21:41:32 Building LongTable...
2024-05-06 21:41:32 Building assay index...
2024-05-06 21:41:32 Joining rowData to assayIndex...
2024-05-06 21:41:33 Joining colData to assayIndex...
2024-05-06 21:41:33 Joining assays to assayIndex...
2024-05-06 21:41:34 Setting assayIndex key...
2024-05-06 21:41:34 Building LongTable...
INFO [2024-05-06 21:41:34] Manifest loaded successfully
INFO [2024-05-06 21:41:34] Manifest loaded successfully
INFO [2024-05-06 21:41:34] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:35] Plate 201904190a read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190b read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190c read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190d read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190e read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190f read; 384 wells
INFO [2024-05-06 21:41:35] File done
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:35] Plate 201904197a read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197b read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197c read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197d read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197e read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197f read; 384 wells
INFO [2024-05-06 21:41:35] File done
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:35] Plate 201904190a read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190b read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190c read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190d read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190e read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190f read; 384 wells
INFO [2024-05-06 21:41:35] File done
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:35] Plate 201904197a read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197b read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197c read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197d read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197e read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904197f read; 384 wells
INFO [2024-05-06 21:41:35] File done
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:35] Plate 201904190a read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190b read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190c read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190d read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190e read; 384 wells
INFO [2024-05-06 21:41:35] Plate 201904190f read; 384 wells
INFO [2024-05-06 21:41:35] File done
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-05-06 21:41:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-05-06 21:41:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:35] Loading Template_7daytreated.xlsx
INFO [2024-05-06 21:41:35] Loading Template_Untreated.xlsx
INFO [2024-05-06 21:41:35] Templates loaded successfully!
INFO [2024-05-06 21:41:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:35] Loading Template_7daytreated.xlsx
INFO [2024-05-06 21:41:35] Loading Template_Untreated.xlsx
INFO [2024-05-06 21:41:35] Templates loaded successfully!
INFO [2024-05-06 21:41:35] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:35] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-05-06 21:41:35] Templates loaded successfully!
INFO [2024-05-06 21:41:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:35] Loading Template_7daytreated.xlsx
INFO [2024-05-06 21:41:35] Templates loaded successfully!
INFO [2024-05-06 21:41:35] Manifest loaded successfully
INFO [2024-05-06 21:41:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:35] Loading Template_7daytreated.xlsx
INFO [2024-05-06 21:41:35] Loading Template_Untreated.xlsx
INFO [2024-05-06 21:41:35] Templates loaded successfully!
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:36] Plate 201904190a read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904190b read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904190c read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904190d read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904190e read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904190f read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-06 21:41:36] Plate 201904197a read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904197b read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904197c read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904197d read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904197e read; 384 wells
INFO [2024-05-06 21:41:36] Plate 201904197f read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Manifest loaded successfully
INFO [2024-05-06 21:41:36] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:36] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-05-06 21:41:36] Templates loaded successfully!
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-05-06 21:41:36] Manifest loaded successfully
INFO [2024-05-06 21:41:36] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:36] Loading Project40.treated.template.xlsx
INFO [2024-05-06 21:41:36] Loading Project40.untreated.template.xlsx
INFO [2024-05-06 21:41:36] Templates loaded successfully!
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0109269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0109269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0309269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0309269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0409269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0409269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0509269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0509269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0609269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0609269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0709269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0709269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0809269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0809269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0909269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H0909269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H1109269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H1109269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H1209269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H1209269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H1409269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate H1409269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate K0209269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate K0209269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate K0809269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate K0809269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate K1009269D00 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-05-06 21:41:36] Plate K1009269D01 read; 384 wells
INFO [2024-05-06 21:41:36] File done
INFO [2024-05-06 21:41:36] Manifest loaded successfully
INFO [2024-05-06 21:41:36] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:36] Loading Template_7daytreated.xlsx
INFO [2024-05-06 21:41:36] Loading Template_Untreated.xlsx
INFO [2024-05-06 21:41:36] Templates loaded successfully!
INFO [2024-05-06 21:41:36] Manifest loaded successfully
INFO [2024-05-06 21:41:36] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-06 21:41:36] Loading Template_7daytreated.xlsx
INFO [2024-05-06 21:41:36] Loading Template_Untreated.xlsx
INFO [2024-05-06 21:41:36] Templates loaded successfully!
INFO [2024-05-06 21:41:36] Manifest loaded successfully
INFO [2024-05-06 21:41:36] Reading Template_trt.tsv with load_templates_tsv
INFO [2024-05-06 21:41:36] Loading Template_trt.tsv
INFO [2024-05-06 21:41:36] Loading Template_untrt.tsv
INFO [2024-05-06 21:41:36] Templates loaded successfully!
INFO [2024-05-06 21:41:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/gDRimport/extdata/data5/RawData.tsv
WARN [2024-05-06 21:41:37] Metadata field names for  cannot contain spaces --> corrected to: Gnumber
WARN [2024-05-06 21:41:37] Header Gnumber in  corrected to Gnumber
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 132 ]
> 
> 
> proc.time()
   user  system elapsed 
 15.256   0.928  16.206

Example timings

gDRimport.Rcheck/gDRimport-Ex.timings

nameusersystemelapsed
check_metadata_names0.0280.0050.033
convert_MAE_to_PSet2.9240.0662.995
convert_pset_to_df0.0550.0070.064
detect_file_format0.0780.0100.089
getPSet0.0420.0030.045
get_exception_data0.0030.0010.004
get_test_D300_data0.0010.0010.001
get_test_EnVision_data0.0010.0000.001
get_test_Tecan_data0.0000.0000.001
get_test_data0.0000.0010.001
get_test_tsv_data0.0010.0000.001
import_D3000.7650.1590.928
is_readable_v000
load_data0.3460.0230.369
load_manifest0.0120.0010.014
load_results0.2560.0090.266
load_templates0.0590.0100.070
manifest_path-method0.0010.0000.001
parse_D300_xml0.2640.0020.267
read_excel_to_dt0.0080.0040.013
result_path-method0.0000.0000.001
setEnvForPSet000
standardize_record_values0.0000.0000.001
template_path-method0.0010.0000.001