Mac ARM64 build report for BioC 3.19 - CHECK results for flowcatchR on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4461
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowcatchR_1.38.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/flowcatchR.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowcatchR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowcatchR’ version ‘1.38.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowcatchR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘EBImage’ which was already attached by Depends.
  Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/flowcatchR.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowcatchR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘flowcatchR’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowcatchR)

Tests output

Example timings

name	user	system	elapsed
Frames	0.105	0.006	0.111
add.contours	0.001	0.001	0.001
channel.Frames	0.094	0.002	0.096
crop.Frames	0.037	0.001	0.038
export.Frames	0.000	0.000	0.001
export.particles	0.001	0.001	0.001
inspect.Frames	0.000	0.000	0.001
kinematics	0.065	0.002	0.067
length.Frames	0.092	0.001	0.093
link.particles	0.028	0.001	0.028
matchTrajToParticles	0.053	0.004	0.057
normalizeFrames	0.584	0.032	0.616
particles	0.000	0.001	0.000
penaltyFunctionGenerator	0	0	0
plot.TrajectorySet	0.046	0.002	0.048
plot2D.TrajectorySet	0.081	0.003	0.084
preprocess.Frames	0.223	0.032	0.256
read.Frames	0	0	0
read.particles	0	0	0
rotate.Frames	0.044	0.011	0.054
select.Frames	0.193	0.022	0.215
select.particles	0.007	0.000	0.008
shinyFlow	0	0	0
show-Frames-method	0.030	0.005	0.036
show-KinematicsFeatures-method	0.048	0.002	0.050
show-KinematicsFeaturesSet-method	0.058	0.002	0.061
show-LinkedParticleSet-method	0.038	0.001	0.038
show-ParticleSet-method	0.002	0.001	0.003
show-TrajectorySet-method	0.050	0.001	0.050
snap	0	0	0
trajectories	0.049	0.002	0.051

CHECK results for flowcatchR on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings