Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:33 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 710/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
fcScan 1.18.0 (landing page) Pierre Khoueiry
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the fcScan package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: fcScan |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.18.0.tar.gz |
StartedAt: 2024-05-06 21:30:43 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 21:32:32 -0400 (Mon, 06 May 2024) |
EllapsedTime: 109.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: fcScan.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/fcScan.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘fcScan/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fcScan’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fcScan’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘fcScan’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("fcScan") Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': expand.grid, I, unname Loading required package: IRanges Loading required package: GenomeInfoDb 17 entries loaded Running getCluster using 1 threads Time difference of 0.07203794 secs Sites in condition do not match sites in data 3 entries loaded Running getCluster using 1 threads Time difference of 0.02400684 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02384496 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02534294 secs 17 entries loaded Running getCluster using 1 threads No cluster found 17 entries loaded Running getCluster using 1 threads Time difference of 0.02740908 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08236408 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02393794 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02074981 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02040815 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02434802 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02286386 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02258301 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02165008 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.01988602 secs 10 entries loaded Running getCluster using 1 threads Time difference of 0.02297091 secs 10 entries loaded Running getCluster using 1 threads No cluster found 10 entries loaded Running getCluster using 1 threads Time difference of 0.02318215 secs 16 entries loaded Running getCluster using 1 threads Time difference of 0.02112913 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02284503 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02372599 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02332497 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02410316 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.02536798 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.436722 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02109098 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02087688 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02265596 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02069616 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02011609 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02055311 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02873397 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02732396 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02859592 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.03452206 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.0236671 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02842808 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02634907 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02357697 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.0260458 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02098298 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02870893 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02254891 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.02838397 secs RUNIT TEST PROTOCOL -- Mon May 6 21:32:28 2024 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : fcScan RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 6.501 0.320 6.866
fcScan.Rcheck/fcScan-Ex.timings
name | user | system | elapsed | |
getCluster | 0.093 | 0.005 | 0.098 | |