Back to Mac ARM64 build report for BioC 3.19
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This page was generated on 2024-05-07 11:32:33 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 681/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
escheR 1.4.0  (landing page)
Boyi Guo
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/escheR
git_branch: RELEASE_3_19
git_last_commit: 76cc4f9
git_last_commit_date: 2024-04-30 11:48:23 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for escheR on kjohnson3


To the developers/maintainers of the escheR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: escheR
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR
StartedAt: 2024-05-06 17:08:51 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 17:09:06 -0400 (Mon, 06 May 2024)
EllapsedTime: 15.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR
###
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* checking for file ‘escheR/DESCRIPTION’ ... OK
* preparing ‘escheR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘more_than_visium.Rmd’ using rmarkdown

Quitting from lines  at lines 29-49 [redDim_spe] (more_than_visium.Rmd)
Error: processing vignette 'more_than_visium.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'logNormCounts': "Visium_humanDLPFC" matches more than 1 ExperimentHub resource
--- failed re-building ‘more_than_visium.Rmd’

--- re-building ‘SRT_eg.Rmd’ using rmarkdown

Quitting from lines  at lines 79-84 [data.import] (SRT_eg.Rmd)
Error: processing vignette 'SRT_eg.Rmd' failed with diagnostics:
"Visium_humanDLPFC" matches more than 1 ExperimentHub resource
--- failed re-building ‘SRT_eg.Rmd’

SUMMARY: processing the following files failed:
  ‘more_than_visium.Rmd’ ‘SRT_eg.Rmd’

Error: Vignette re-building failed.
Execution halted