Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:32 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 486/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.12.0 (landing page) Oluwafemi Olusoji
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the cyanoFilter package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.12.0.tar.gz |
StartedAt: 2024-05-06 20:50:25 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 20:51:02 -0400 (Mon, 06 May 2024) |
EllapsedTime: 37.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/cyanoFilter.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 0.228 | 0.017 | 0.247 | |
PhytoFilter | 0.227 | 0.011 | 0.238 | |
PhytopFilter | 0.212 | 0.013 | 0.224 | |
accTest | 0.132 | 0.008 | 0.140 | |
accuracy | 0.125 | 0.007 | 0.131 | |
cellmargin | 0.101 | 0.008 | 0.109 | |
clusterExtract | 0.266 | 0.012 | 0.278 | |
clusterExtractp | 0.353 | 0.016 | 0.371 | |
debrisNc | 0.106 | 0.016 | 0.122 | |
fullFlowframe-MarginEvents-method | 0.102 | 0.008 | 0.110 | |
fullFlowframe-PhytopFilter-method | 0.200 | 0.012 | 0.213 | |
fullFlowframe | 0.101 | 0.007 | 0.107 | |
gateFunc | 3.927 | 0.178 | 3.283 | |
ggpairsDens | 0.995 | 0.061 | 1.055 | |
ggplotDens | 0.327 | 0.015 | 0.343 | |
ggplotDens2 | 0.258 | 0.015 | 0.272 | |
goodfcs | 0.018 | 0.002 | 0.021 | |
is.DebrisFilter | 0.000 | 0.000 | 0.001 | |
is.MarginEvents | 0 | 0 | 0 | |
is.PhytopFilter | 0 | 0 | 0 | |
is.flowFrame | 0 | 0 | 0 | |
is.flowSet | 0 | 0 | 0 | |
lnTrans | 0.070 | 0.004 | 0.074 | |
newFlowframe | 0.190 | 0.017 | 0.208 | |
nona | 0.033 | 0.002 | 0.035 | |
noneg | 0.056 | 0.004 | 0.060 | |
oneDgate | 0.071 | 0.016 | 0.087 | |
pairsPlot | 0.723 | 0.052 | 0.775 | |
pigmentGate | 0.089 | 0.013 | 0.103 | |
reducedFlowframe-MarginEvents-method | 0.101 | 0.005 | 0.106 | |
reducedFlowframe | 0.101 | 0.005 | 0.106 | |
retain | 0.006 | 0.000 | 0.006 | |
rowNumbers | 0.071 | 0.015 | 0.087 | |
summaries-DebrisFilter-method | 0.097 | 0.007 | 0.105 | |
summaries-MarginEvents-method | 0.105 | 0.006 | 0.111 | |
summaries-PhytopFilter-method | 0.209 | 0.009 | 0.217 | |
summaries | 0.109 | 0.007 | 0.116 | |