Back to Mac ARM64 build report for BioC 3.19
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This page was generated on 2024-05-07 11:32:30 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 199/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodb 1.12.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_19
git_last_commit: e3204cc
git_last_commit_date: 2024-04-30 11:34:11 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for biodb on kjohnson3


To the developers/maintainers of the biodb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodb
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data biodb
StartedAt: 2024-05-06 16:17:29 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 16:18:00 -0400 (Mon, 06 May 2024)
EllapsedTime: 31.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data biodb
###
##############################################################################
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* checking for file ‘biodb/DESCRIPTION’ ... OK
* preparing ‘biodb’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘biodb.Rmd’ using rmarkdown
--- finished re-building ‘biodb.Rmd’

--- re-building ‘details.Rmd’ using rmarkdown
--- finished re-building ‘details.Rmd’

--- re-building ‘entries.Rmd’ using rmarkdown
[WARNING] Citeproc: citation H not found
--- finished re-building ‘entries.Rmd’

--- re-building ‘new_connector.Rmd’ using rmarkdown

Quitting from lines  at lines 420-422 [unnamed-chunk-17] (new_connector.Rmd)
Error: processing vignette 'new_connector.Rmd' failed with diagnostics:
attempt to apply non-function
--- failed re-building ‘new_connector.Rmd’

--- re-building ‘new_entry_field.Rmd’ using rmarkdown
--- finished re-building ‘new_entry_field.Rmd’

SUMMARY: processing the following file failed:
  ‘new_connector.Rmd’

Error: Vignette re-building failed.
Execution halted