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This page was generated on 2024-05-07 11:32:46 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2100/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SummarizedBenchmark 2.22.0  (landing page)
Patrick Kimes
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/SummarizedBenchmark
git_branch: RELEASE_3_19
git_last_commit: 191c827
git_last_commit_date: 2024-04-30 11:04:49 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for SummarizedBenchmark on kjohnson3


To the developers/maintainers of the SummarizedBenchmark package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SummarizedBenchmark
Version: 2.22.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
StartedAt: 2024-05-06 19:12:19 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 19:13:45 -0400 (Mon, 06 May 2024)
EllapsedTime: 85.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark
###
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* checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK
* preparing ‘SummarizedBenchmark’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown
2024-05-06 19:12:34.268 R[68329:37188372] XType: Using static font registry.
--- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’

--- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown

Quitting from lines  at lines 97-102 [run-sim-buildbench] (CaseStudy-SingleCellSimulation.Rmd)
Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics:

No method returned valid values for any assays!

--- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’

--- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown
--- finished re-building ‘Feature-ErrorHandling.Rmd’

--- re-building ‘Feature-Iterative.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Iterative.Rmd’

--- re-building ‘Feature-Parallel.Rmd’ using rmarkdown
--- finished re-building ‘Feature-Parallel.Rmd’

--- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’

--- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’

--- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown
--- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘CaseStudy-SingleCellSimulation.Rmd’

Error: Vignette re-building failed.
Execution halted