Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:41 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1583/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PLSDAbatch 1.0.0 (landing page) Yiwen (Eva) Wang
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the PLSDAbatch package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: PLSDAbatch |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PLSDAbatch.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PLSDAbatch_1.0.0.tar.gz |
StartedAt: 2024-05-06 23:47:37 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 23:49:14 -0400 (Mon, 06 May 2024) |
EllapsedTime: 97.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PLSDAbatch.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PLSDAbatch.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PLSDAbatch_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/PLSDAbatch.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PLSDAbatch/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PLSDAbatch’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PLSDAbatch’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ...Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PLSDAbatch.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PLSDAbatch ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘PLSDAbatch’ ... ** using staged installation Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: PLSDAbatch *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PLSDAbatch)
PLSDAbatch.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(PLSDAbatch) > > test_check("PLSDAbatch") [ FAIL 0 | WARN 1 | SKIP 0 | PASS 31 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 31 ] > > proc.time() user system elapsed 5.927 0.206 6.136
PLSDAbatch.Rcheck/PLSDAbatch-Ex.timings
name | user | system | elapsed | |
PLSDA | 0.391 | 0.009 | 0.400 | |
PLSDA_batch | 0.109 | 0.008 | 0.119 | |
PreFL | 0.088 | 0.007 | 0.095 | |
Scatter_Density | 0.637 | 0.027 | 0.666 | |
alignment_score | 0.071 | 0.006 | 0.077 | |
box_plot | 0.288 | 0.009 | 0.296 | |
deflate_mtx | 0.107 | 0.010 | 0.117 | |
density_plot | 0.202 | 0.007 | 0.210 | |
linear_regres | 0.343 | 0.008 | 0.351 | |
partVar_plot | 0.558 | 0.011 | 0.570 | |
pb_color | 0.001 | 0.000 | 0.000 | |
percentile_norm | 0.330 | 0.012 | 0.343 | |
percentileofscore | 0.139 | 0.008 | 0.147 | |