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This page was generated on 2024-05-07 11:32:41 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1573/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PIUMA 1.0.0  (landing page)
Mattia Chiesa
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/PIUMA
git_branch: RELEASE_3_19
git_last_commit: 0ae5da2
git_last_commit_date: 2024-04-30 11:55:59 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

BUILD BIN results for PIUMA on kjohnson3


To the developers/maintainers of the PIUMA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: PIUMA
Version: 1.0.0
Command: rm -rf PIUMA.buildbin-libdir && mkdir PIUMA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PIUMA_1.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R PIUMA.buildbin-libdir
StartedAt: 2024-05-07 02:49:03 -0400 (Tue, 07 May 2024)
EndedAt: 2024-05-07 02:49:14 -0400 (Tue, 07 May 2024)
EllapsedTime: 11.2 seconds
RetCode: 0
Status:   OK  
PackageFile: PIUMA_1.0.0.tgz
PackageFileSize: 2.921 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf PIUMA.buildbin-libdir && mkdir PIUMA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PIUMA_1.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R PIUMA.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PIUMA.buildbin-libdir PIUMA_1.0.0.tar.gz'
>>>>>>> 

* installing *source* package ‘PIUMA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘getOrigData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setOrigData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getScaledData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setScaledData’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getOutcomeFact’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setOutcomeFact’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getOutcome’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setOutcome’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getComp’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setComp’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getDistMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setDistMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getDfMapper’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setDfMapper’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getJacc’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setJacc’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘getNodeDataMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
in method for ‘setNodeDataMat’ with signature ‘x="TDAobj"’: no definition for class “TDAobj”
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PIUMA)