Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:39 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1326/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Motif2Site 1.8.0 (landing page) Peyman Zarrineh
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the Motif2Site package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Motif2Site |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Motif2Site.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Motif2Site_1.8.0.tar.gz |
StartedAt: 2024-05-06 23:09:30 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 23:13:39 -0400 (Mon, 06 May 2024) |
EllapsedTime: 248.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Motif2Site.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Motif2Site.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Motif2Site_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/Motif2Site.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Motif2Site/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Motif2Site’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .gitignoreommit These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Motif2Site’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed pairwisDifferential 56.211 0.565 56.786 recenterBindingSitesAcrossExperiments 56.186 0.527 56.760 Motif2Site 53.885 0.512 54.398 DetectBindingSitesBed 26.878 0.324 27.209 DetectBindingSitesMotif 25.050 0.132 25.186 compareMotifs2UserProvidedRegions 6.910 0.078 6.990 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/Motif2Site.Rcheck/00check.log’ for details.
Motif2Site.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Motif2Site ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘Motif2Site’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Motif2Site)
Motif2Site.Rcheck/Motif2Site-Ex.timings
name | user | system | elapsed | |
Bed2Granges | 0.974 | 0.026 | 1.000 | |
DetectBindingSitesBed | 26.878 | 0.324 | 27.209 | |
DetectBindingSitesMotif | 25.050 | 0.132 | 25.186 | |
Motif2Site | 53.885 | 0.512 | 54.398 | |
compareBedFiless2UserProvidedRegions | 2.995 | 0.003 | 2.999 | |
compareMotifs2UserProvidedRegions | 6.910 | 0.078 | 6.990 | |
data | 0.384 | 0.001 | 0.385 | |
pairwisDifferential | 56.211 | 0.565 | 56.786 | |
recenterBindingSitesAcrossExperiments | 56.186 | 0.527 | 56.760 | |