Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:36 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the HPiP package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-05-06 22:15:49 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 22:18:07 -0400 (Mon, 06 May 2024) |
EllapsedTime: 137.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/HPiP.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 17.594 0.509 18.106 FSmethod 17.309 0.569 17.881 corr_plot 16.676 0.549 17.227 pred_ensembel 5.659 0.473 4.274 enrichfindP 0.161 0.029 9.945 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 99.073143 final value 93.836066 converged Fitting Repeat 2 # weights: 103 initial value 107.099533 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.637790 iter 10 value 93.988238 final value 93.988096 converged Fitting Repeat 4 # weights: 103 initial value 95.509894 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 101.281113 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 100.820591 iter 10 value 90.094000 iter 20 value 89.911442 iter 30 value 89.910281 iter 30 value 89.910281 iter 30 value 89.910281 final value 89.910281 converged Fitting Repeat 2 # weights: 305 initial value 94.415442 final value 93.988095 converged Fitting Repeat 3 # weights: 305 initial value 119.669658 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 96.674978 final value 93.836066 converged Fitting Repeat 5 # weights: 305 initial value 102.397782 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 98.230689 iter 10 value 93.536481 iter 20 value 93.437578 iter 30 value 92.276910 iter 40 value 91.328718 iter 50 value 91.316206 final value 91.316188 converged Fitting Repeat 2 # weights: 507 initial value 102.097071 final value 93.836066 converged Fitting Repeat 3 # weights: 507 initial value 102.282777 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 124.271974 iter 10 value 93.835714 iter 10 value 93.835714 iter 10 value 93.835714 final value 93.835714 converged Fitting Repeat 5 # weights: 507 initial value 96.881672 final value 93.671508 converged Fitting Repeat 1 # weights: 103 initial value 101.896642 iter 10 value 93.651609 iter 20 value 87.256001 iter 30 value 86.452842 iter 40 value 85.575212 iter 50 value 84.301804 iter 60 value 84.068432 iter 70 value 83.792217 iter 80 value 83.600979 final value 83.558555 converged Fitting Repeat 2 # weights: 103 initial value 106.764476 iter 10 value 93.979783 iter 20 value 91.175350 iter 30 value 90.824779 iter 40 value 89.548880 iter 50 value 89.376138 iter 60 value 88.834894 iter 70 value 86.975081 iter 80 value 86.537859 iter 90 value 86.194472 iter 100 value 86.185424 final value 86.185424 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.668474 iter 10 value 94.056691 iter 20 value 93.898205 iter 30 value 93.840222 iter 40 value 91.641217 iter 50 value 89.426009 iter 60 value 89.144337 iter 70 value 86.140033 iter 80 value 85.085956 iter 90 value 84.710007 iter 100 value 84.352940 final value 84.352940 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.214784 iter 10 value 94.049472 iter 20 value 88.271720 iter 30 value 86.935217 iter 40 value 86.845454 iter 50 value 86.737820 iter 60 value 86.569647 iter 70 value 85.601338 iter 80 value 85.519970 iter 90 value 85.340119 iter 100 value 85.194103 final value 85.194103 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 100.173914 iter 10 value 94.041784 iter 20 value 89.323864 iter 30 value 88.176509 iter 40 value 87.209653 iter 50 value 86.549214 iter 60 value 86.441523 final value 86.441457 converged Fitting Repeat 1 # weights: 305 initial value 106.275176 iter 10 value 93.903591 iter 20 value 93.532363 iter 30 value 90.063867 iter 40 value 89.467105 iter 50 value 89.209140 iter 60 value 87.130502 iter 70 value 84.512523 iter 80 value 83.350565 iter 90 value 82.896974 iter 100 value 82.833678 final value 82.833678 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 114.420855 iter 10 value 93.823442 iter 20 value 87.852942 iter 30 value 86.809654 iter 40 value 86.237750 iter 50 value 85.068586 iter 60 value 84.131258 iter 70 value 82.765784 iter 80 value 82.396247 iter 90 value 82.225254 iter 100 value 81.939192 final value 81.939192 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.379084 iter 10 value 93.943714 iter 20 value 91.340152 iter 30 value 89.064929 iter 40 value 87.976477 iter 50 value 86.931769 iter 60 value 86.729346 iter 70 value 85.447876 iter 80 value 84.978264 iter 90 value 83.911797 iter 100 value 83.491717 final value 83.491717 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.324626 iter 10 value 93.978734 iter 20 value 87.701061 iter 30 value 86.544055 iter 40 value 86.104881 iter 50 value 85.161064 iter 60 value 84.034444 iter 70 value 83.539479 iter 80 value 82.987290 iter 90 value 82.697687 iter 100 value 82.615568 final value 82.615568 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 117.138504 iter 10 value 93.897622 iter 20 value 88.224984 iter 30 value 87.289097 iter 40 value 86.862137 iter 50 value 86.521699 iter 60 value 86.039148 iter 70 value 84.970424 iter 80 value 83.962944 iter 90 value 83.368486 iter 100 value 83.154878 final value 83.154878 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.328493 iter 10 value 94.056209 iter 20 value 92.197908 iter 30 value 89.817303 iter 40 value 87.124423 iter 50 value 84.349119 iter 60 value 83.224308 iter 70 value 82.569753 iter 80 value 82.138351 iter 90 value 81.893251 iter 100 value 81.835705 final value 81.835705 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.671750 iter 10 value 93.897931 iter 20 value 89.037715 iter 30 value 86.465196 iter 40 value 85.482719 iter 50 value 84.844037 iter 60 value 83.713775 iter 70 value 83.169221 iter 80 value 82.983918 iter 90 value 82.937512 iter 100 value 82.882733 final value 82.882733 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.220675 iter 10 value 93.812308 iter 20 value 91.714695 iter 30 value 91.357776 iter 40 value 90.806558 iter 50 value 88.069036 iter 60 value 86.378868 iter 70 value 85.895411 iter 80 value 85.639551 iter 90 value 84.276988 iter 100 value 83.983115 final value 83.983115 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 122.536531 iter 10 value 93.759464 iter 20 value 88.931496 iter 30 value 86.084974 iter 40 value 83.413993 iter 50 value 83.061646 iter 60 value 82.668171 iter 70 value 82.224384 iter 80 value 82.020516 iter 90 value 81.972683 iter 100 value 81.926364 final value 81.926364 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 103.431488 iter 10 value 94.048141 iter 20 value 93.901850 iter 30 value 93.031852 iter 40 value 89.514348 iter 50 value 87.960167 iter 60 value 85.629096 iter 70 value 85.020249 iter 80 value 83.453329 iter 90 value 82.907808 iter 100 value 82.693202 final value 82.693202 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.338246 final value 94.054508 converged Fitting Repeat 2 # weights: 103 initial value 111.340406 final value 94.054632 converged Fitting Repeat 3 # weights: 103 initial value 99.713458 final value 94.054577 converged Fitting Repeat 4 # weights: 103 initial value 98.256203 final value 94.054833 converged Fitting Repeat 5 # weights: 103 initial value 95.512211 final value 94.054729 converged Fitting Repeat 1 # weights: 305 initial value 96.733008 iter 10 value 94.057376 iter 20 value 94.052930 iter 30 value 93.265361 iter 40 value 86.662872 iter 50 value 86.296460 final value 86.290931 converged Fitting Repeat 2 # weights: 305 initial value 103.905681 iter 10 value 94.057534 iter 20 value 94.033809 iter 30 value 93.671726 iter 30 value 93.671726 iter 30 value 93.671726 final value 93.671726 converged Fitting Repeat 3 # weights: 305 initial value 102.060728 iter 10 value 93.842281 iter 20 value 93.613638 iter 30 value 91.952045 iter 40 value 91.856487 iter 50 value 91.856189 iter 60 value 91.337840 iter 70 value 90.979168 iter 80 value 90.977917 iter 80 value 90.977916 final value 90.977916 converged Fitting Repeat 4 # weights: 305 initial value 95.061953 iter 10 value 94.057527 iter 20 value 93.968335 iter 30 value 93.622685 iter 40 value 90.976330 iter 50 value 90.935780 final value 90.935753 converged Fitting Repeat 5 # weights: 305 initial value 102.290129 iter 10 value 94.058324 iter 20 value 94.053166 final value 94.052948 converged Fitting Repeat 1 # weights: 507 initial value 109.004542 iter 10 value 93.509935 iter 20 value 92.981948 iter 30 value 92.964451 iter 40 value 92.942042 iter 50 value 92.941253 iter 60 value 92.406206 iter 70 value 91.495125 iter 80 value 91.483052 iter 90 value 91.481191 iter 100 value 91.478872 final value 91.478872 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 96.722807 iter 10 value 93.794101 iter 20 value 93.790812 iter 30 value 87.795777 iter 40 value 85.422779 iter 50 value 84.163714 iter 60 value 84.003702 iter 70 value 84.003055 iter 70 value 84.003054 final value 84.003054 converged Fitting Repeat 3 # weights: 507 initial value 95.460536 iter 10 value 94.060481 iter 20 value 93.944209 iter 30 value 92.387355 iter 40 value 91.417201 iter 50 value 91.014814 final value 91.008760 converged Fitting Repeat 4 # weights: 507 initial value 99.744426 iter 10 value 89.353612 iter 20 value 86.361746 iter 30 value 86.155380 iter 40 value 84.277870 iter 50 value 82.372918 iter 60 value 82.103067 iter 70 value 82.002132 iter 80 value 81.991984 iter 90 value 81.988248 iter 100 value 81.894018 final value 81.894018 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.399386 iter 10 value 94.061230 iter 20 value 93.941631 iter 30 value 93.138692 iter 40 value 89.922189 iter 50 value 86.497400 iter 60 value 86.014685 iter 70 value 84.468968 iter 80 value 84.326654 iter 90 value 83.028582 iter 100 value 81.871882 final value 81.871882 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.298163 iter 10 value 94.025896 final value 93.923039 converged Fitting Repeat 2 # weights: 103 initial value 98.031009 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 99.948613 iter 10 value 94.026543 final value 94.026542 converged Fitting Repeat 4 # weights: 103 initial value 105.539948 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.440542 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.031678 iter 10 value 89.515592 iter 20 value 89.199813 iter 30 value 89.013227 iter 40 value 88.834992 iter 50 value 88.198835 iter 60 value 88.133215 final value 88.133185 converged Fitting Repeat 2 # weights: 305 initial value 105.002018 final value 93.923039 converged Fitting Repeat 3 # weights: 305 initial value 95.860755 iter 10 value 93.929996 final value 93.923039 converged Fitting Repeat 4 # weights: 305 initial value 102.287027 iter 10 value 93.994665 final value 93.976244 converged Fitting Repeat 5 # weights: 305 initial value 97.054306 iter 10 value 87.951518 iter 10 value 87.951518 iter 10 value 87.951518 final value 87.951518 converged Fitting Repeat 1 # weights: 507 initial value 118.839948 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 117.431784 iter 10 value 94.026544 final value 94.026542 converged Fitting Repeat 3 # weights: 507 initial value 96.183959 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 94.726781 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 116.485698 iter 10 value 94.052434 iter 10 value 94.052434 iter 10 value 94.052434 final value 94.052434 converged Fitting Repeat 1 # weights: 103 initial value 98.641972 iter 10 value 94.462434 iter 20 value 89.972950 iter 30 value 86.540236 iter 40 value 85.051266 iter 50 value 84.504294 iter 60 value 84.468133 iter 70 value 84.440012 final value 84.439571 converged Fitting Repeat 2 # weights: 103 initial value 99.322024 iter 10 value 94.502304 iter 20 value 94.457358 iter 30 value 92.129367 iter 40 value 86.149297 iter 50 value 84.882490 iter 60 value 84.851464 iter 70 value 84.847205 final value 84.846895 converged Fitting Repeat 3 # weights: 103 initial value 100.964207 iter 10 value 94.580635 iter 20 value 94.486488 iter 30 value 94.050749 iter 40 value 89.028830 iter 50 value 85.173466 iter 60 value 85.062636 iter 70 value 85.053375 final value 85.053365 converged Fitting Repeat 4 # weights: 103 initial value 100.976068 iter 10 value 94.513679 iter 20 value 93.650242 iter 30 value 90.429919 iter 40 value 89.282870 iter 50 value 88.426707 iter 60 value 84.455629 iter 70 value 83.873750 iter 80 value 83.285480 iter 90 value 83.148674 final value 83.146870 converged Fitting Repeat 5 # weights: 103 initial value 104.808246 iter 10 value 94.458533 iter 20 value 94.235609 iter 30 value 94.041273 iter 40 value 93.910304 iter 50 value 92.610549 iter 60 value 89.837382 iter 70 value 88.706054 iter 80 value 88.263800 iter 90 value 88.034380 iter 100 value 83.331718 final value 83.331718 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 110.544420 iter 10 value 94.302903 iter 20 value 92.393289 iter 30 value 90.675733 iter 40 value 89.669675 iter 50 value 86.067802 iter 60 value 84.314850 iter 70 value 83.799894 iter 80 value 83.394245 iter 90 value 83.166529 iter 100 value 82.599591 final value 82.599591 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 122.668238 iter 10 value 94.322876 iter 20 value 88.588583 iter 30 value 87.771782 iter 40 value 85.253555 iter 50 value 84.497233 iter 60 value 83.933990 iter 70 value 83.428937 iter 80 value 82.370428 iter 90 value 81.872094 iter 100 value 81.783187 final value 81.783187 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.886119 iter 10 value 94.473407 iter 20 value 87.818842 iter 30 value 85.053360 iter 40 value 84.910163 iter 50 value 84.886886 iter 60 value 84.851070 iter 70 value 84.708179 iter 80 value 83.770173 iter 90 value 83.140326 iter 100 value 82.182441 final value 82.182441 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 110.812007 iter 10 value 94.903459 iter 20 value 92.022139 iter 30 value 85.600729 iter 40 value 85.081503 iter 50 value 83.423215 iter 60 value 82.688103 iter 70 value 82.341441 iter 80 value 82.211120 iter 90 value 82.204958 iter 100 value 82.200685 final value 82.200685 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.879049 iter 10 value 94.504733 iter 20 value 85.869919 iter 30 value 85.722476 iter 40 value 85.051675 iter 50 value 84.162596 iter 60 value 83.370580 iter 70 value 82.931246 iter 80 value 82.308806 iter 90 value 82.043294 iter 100 value 81.983470 final value 81.983470 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.404116 iter 10 value 96.954348 iter 20 value 87.793426 iter 30 value 85.021026 iter 40 value 84.228912 iter 50 value 84.075759 iter 60 value 84.039705 iter 70 value 84.030570 iter 80 value 83.942856 iter 90 value 83.702612 iter 100 value 82.693981 final value 82.693981 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 110.892602 iter 10 value 94.466787 iter 20 value 93.307915 iter 30 value 86.975657 iter 40 value 84.265660 iter 50 value 83.738576 iter 60 value 83.688191 iter 70 value 83.247294 iter 80 value 82.877787 iter 90 value 82.431765 iter 100 value 82.151149 final value 82.151149 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.137306 iter 10 value 94.385843 iter 20 value 88.826087 iter 30 value 88.259673 iter 40 value 87.132659 iter 50 value 84.519172 iter 60 value 82.962962 iter 70 value 82.357504 iter 80 value 82.196782 iter 90 value 81.874689 iter 100 value 81.541996 final value 81.541996 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 120.666972 iter 10 value 94.646610 iter 20 value 93.136102 iter 30 value 90.972989 iter 40 value 85.330757 iter 50 value 84.581993 iter 60 value 83.364535 iter 70 value 83.104742 iter 80 value 82.408136 iter 90 value 82.159158 iter 100 value 81.966309 final value 81.966309 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.792925 iter 10 value 92.529461 iter 20 value 86.855658 iter 30 value 85.904388 iter 40 value 85.046361 iter 50 value 84.584341 iter 60 value 83.987875 iter 70 value 83.047096 iter 80 value 82.704739 iter 90 value 82.333470 iter 100 value 82.024191 final value 82.024191 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 109.164859 final value 94.485894 converged Fitting Repeat 2 # weights: 103 initial value 95.283909 final value 94.485840 converged Fitting Repeat 3 # weights: 103 initial value 98.825908 final value 94.485822 converged Fitting Repeat 4 # weights: 103 initial value 95.430319 final value 94.485997 converged Fitting Repeat 5 # weights: 103 initial value 99.201477 final value 94.485829 converged Fitting Repeat 1 # weights: 305 initial value 94.804503 iter 10 value 94.094047 iter 20 value 87.950056 iter 30 value 87.557062 iter 40 value 85.056960 iter 50 value 85.011430 final value 85.010318 converged Fitting Repeat 2 # weights: 305 initial value 119.414342 iter 10 value 93.570272 iter 20 value 85.612691 iter 30 value 84.948204 iter 40 value 84.945396 iter 50 value 84.939249 iter 60 value 84.922726 iter 70 value 84.902034 iter 80 value 84.898235 final value 84.898174 converged Fitting Repeat 3 # weights: 305 initial value 94.943020 iter 10 value 94.489087 iter 20 value 94.484223 final value 94.484217 converged Fitting Repeat 4 # weights: 305 initial value 107.183522 iter 10 value 92.478578 iter 20 value 91.473399 iter 30 value 91.471749 iter 40 value 87.420212 iter 50 value 87.288885 iter 60 value 86.641975 final value 86.621041 converged Fitting Repeat 5 # weights: 305 initial value 95.749500 iter 10 value 86.743581 iter 20 value 84.133219 iter 30 value 83.990428 final value 83.989077 converged Fitting Repeat 1 # weights: 507 initial value 126.407187 iter 10 value 94.492554 iter 20 value 94.484235 iter 30 value 94.364996 iter 40 value 94.026244 iter 50 value 93.923815 iter 60 value 93.923505 iter 60 value 93.923505 final value 93.923505 converged Fitting Repeat 2 # weights: 507 initial value 108.084757 iter 10 value 94.494787 iter 20 value 94.492213 iter 30 value 94.486676 iter 40 value 93.523862 iter 50 value 86.799436 iter 60 value 84.990639 iter 70 value 84.861051 iter 80 value 84.837237 iter 90 value 84.821490 iter 100 value 84.175801 final value 84.175801 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 95.947061 iter 10 value 94.393435 iter 20 value 93.903190 iter 30 value 92.289840 iter 40 value 92.160440 iter 50 value 92.159271 iter 60 value 91.676939 iter 70 value 91.671487 final value 91.670896 converged Fitting Repeat 4 # weights: 507 initial value 104.613065 iter 10 value 93.931343 iter 20 value 93.925929 iter 30 value 93.797931 iter 40 value 84.609308 iter 50 value 84.078712 final value 84.078708 converged Fitting Repeat 5 # weights: 507 initial value 108.314449 iter 10 value 92.857835 iter 20 value 85.207417 iter 30 value 84.495666 iter 40 value 84.208212 iter 50 value 83.661649 iter 60 value 83.498645 iter 70 value 83.495452 iter 80 value 83.493852 iter 90 value 82.487508 iter 100 value 82.259494 final value 82.259494 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.733406 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 104.046623 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 103.464260 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 96.792282 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 98.385950 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 99.819215 iter 10 value 87.073691 iter 20 value 86.836205 iter 30 value 86.812237 final value 86.812076 converged Fitting Repeat 2 # weights: 305 initial value 105.211889 iter 10 value 92.821566 iter 20 value 92.189443 iter 30 value 92.186405 final value 92.186286 converged Fitting Repeat 3 # weights: 305 initial value 101.476405 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 98.388536 final value 93.900821 converged Fitting Repeat 5 # weights: 305 initial value 95.217910 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 109.141323 final value 93.915746 converged Fitting Repeat 2 # weights: 507 initial value 102.538545 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 96.247082 final value 93.913919 converged Fitting Repeat 4 # weights: 507 initial value 98.548518 iter 10 value 93.917781 iter 20 value 93.915749 final value 93.915746 converged Fitting Repeat 5 # weights: 507 initial value 98.976432 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 117.798212 iter 10 value 94.055858 iter 20 value 93.930473 iter 30 value 90.921573 iter 40 value 90.231539 iter 50 value 90.023032 iter 60 value 83.207238 iter 70 value 80.837897 iter 80 value 79.920126 iter 90 value 79.827764 iter 100 value 79.720586 final value 79.720586 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 100.394338 iter 10 value 93.023485 iter 20 value 85.588611 iter 30 value 85.031086 iter 40 value 82.108508 iter 50 value 81.159380 iter 60 value 80.985543 iter 70 value 80.825794 iter 80 value 79.796013 iter 90 value 79.241754 final value 79.236117 converged Fitting Repeat 3 # weights: 103 initial value 102.643455 iter 10 value 94.613661 iter 20 value 94.056655 iter 30 value 82.930152 iter 40 value 82.724112 iter 50 value 82.473721 iter 60 value 82.093134 iter 70 value 81.982109 iter 80 value 81.653807 iter 90 value 81.392177 final value 81.392081 converged Fitting Repeat 4 # weights: 103 initial value 114.398784 iter 10 value 94.056086 iter 20 value 93.966850 iter 30 value 90.984698 iter 40 value 83.907711 iter 50 value 82.730453 iter 60 value 82.004106 iter 70 value 81.245051 iter 80 value 80.209761 iter 90 value 80.122901 iter 100 value 79.899108 final value 79.899108 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.808946 iter 10 value 94.072839 iter 20 value 89.496517 iter 30 value 84.979659 iter 40 value 83.948623 iter 50 value 83.425361 iter 60 value 83.337960 iter 70 value 83.327341 iter 80 value 83.228421 iter 90 value 83.207662 final value 83.207591 converged Fitting Repeat 1 # weights: 305 initial value 110.572948 iter 10 value 94.056349 iter 20 value 92.084854 iter 30 value 87.060684 iter 40 value 86.924461 iter 50 value 86.920438 iter 60 value 86.712188 iter 70 value 83.031050 iter 80 value 81.714077 iter 90 value 81.271425 iter 100 value 81.146482 final value 81.146482 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.733823 iter 10 value 93.979931 iter 20 value 82.893675 iter 30 value 82.574854 iter 40 value 82.045254 iter 50 value 79.378132 iter 60 value 78.818448 iter 70 value 78.400433 iter 80 value 78.190170 iter 90 value 78.017416 iter 100 value 77.996929 final value 77.996929 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.115319 iter 10 value 94.208908 iter 20 value 93.198775 iter 30 value 82.408632 iter 40 value 81.746559 iter 50 value 81.103494 iter 60 value 80.991586 iter 70 value 80.957239 iter 80 value 80.322432 iter 90 value 79.901134 iter 100 value 79.791592 final value 79.791592 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.113346 iter 10 value 94.028247 iter 20 value 87.310758 iter 30 value 83.447219 iter 40 value 82.482807 iter 50 value 80.887789 iter 60 value 80.503625 iter 70 value 80.267403 iter 80 value 79.435751 iter 90 value 78.809829 iter 100 value 78.586808 final value 78.586808 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 108.678962 iter 10 value 91.490188 iter 20 value 90.725216 iter 30 value 87.423360 iter 40 value 86.347209 iter 50 value 86.277237 iter 60 value 84.521424 iter 70 value 80.540771 iter 80 value 79.228618 iter 90 value 78.960636 iter 100 value 78.736274 final value 78.736274 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 108.714251 iter 10 value 94.070211 iter 20 value 90.327576 iter 30 value 85.588291 iter 40 value 84.377717 iter 50 value 83.882696 iter 60 value 83.715251 iter 70 value 82.616739 iter 80 value 81.681144 iter 90 value 80.715717 iter 100 value 79.790072 final value 79.790072 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.449095 iter 10 value 94.083968 iter 20 value 92.217808 iter 30 value 91.032680 iter 40 value 90.725309 iter 50 value 90.236533 iter 60 value 84.185842 iter 70 value 83.263337 iter 80 value 81.277915 iter 90 value 80.267008 iter 100 value 79.966450 final value 79.966450 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.000781 iter 10 value 94.269414 iter 20 value 90.664989 iter 30 value 89.822607 iter 40 value 89.767336 iter 50 value 89.672608 iter 60 value 88.160898 iter 70 value 82.897230 iter 80 value 80.066904 iter 90 value 79.512079 iter 100 value 79.165226 final value 79.165226 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.373398 iter 10 value 90.105129 iter 20 value 89.266016 iter 30 value 89.229089 iter 40 value 88.802155 iter 50 value 86.917623 iter 60 value 86.513238 iter 70 value 82.895500 iter 80 value 80.820612 iter 90 value 80.237030 iter 100 value 80.003636 final value 80.003636 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.226177 iter 10 value 94.069044 iter 20 value 93.761097 iter 30 value 91.799348 iter 40 value 88.687889 iter 50 value 83.453490 iter 60 value 80.205375 iter 70 value 78.565816 iter 80 value 78.198418 iter 90 value 78.025894 iter 100 value 77.900472 final value 77.900472 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.596733 final value 94.054685 converged Fitting Repeat 2 # weights: 103 initial value 107.831902 final value 94.054697 converged Fitting Repeat 3 # weights: 103 initial value 102.519844 final value 94.054558 converged Fitting Repeat 4 # weights: 103 initial value 98.868895 final value 94.054445 converged Fitting Repeat 5 # weights: 103 initial value 101.768147 iter 10 value 94.054461 iter 20 value 94.042871 iter 30 value 93.295340 final value 93.289265 converged Fitting Repeat 1 # weights: 305 initial value 115.006778 iter 10 value 94.057251 iter 20 value 94.052992 iter 30 value 93.968780 iter 40 value 93.862536 iter 50 value 85.228653 iter 60 value 84.205496 iter 70 value 83.553046 final value 83.549890 converged Fitting Repeat 2 # weights: 305 initial value 108.157790 iter 10 value 93.920808 iter 20 value 93.916073 iter 30 value 91.000842 iter 40 value 89.968162 iter 50 value 89.960906 iter 50 value 89.960906 iter 50 value 89.960906 final value 89.960906 converged Fitting Repeat 3 # weights: 305 initial value 95.234888 iter 10 value 94.054895 iter 20 value 94.048452 iter 30 value 91.240402 iter 40 value 90.897131 iter 50 value 90.553591 iter 60 value 88.347922 iter 70 value 85.900899 iter 80 value 84.987754 iter 90 value 84.790456 iter 100 value 84.790349 final value 84.790349 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 107.149510 iter 10 value 87.721063 iter 20 value 82.452439 iter 30 value 82.123805 iter 40 value 82.068281 final value 82.068185 converged Fitting Repeat 5 # weights: 305 initial value 94.929316 iter 10 value 94.056488 iter 20 value 94.052921 iter 30 value 91.880713 iter 40 value 90.838729 final value 90.757338 converged Fitting Repeat 1 # weights: 507 initial value 97.348462 iter 10 value 85.915754 iter 20 value 83.307362 iter 30 value 80.974940 iter 40 value 80.556695 final value 80.553144 converged Fitting Repeat 2 # weights: 507 initial value 116.026984 final value 94.060786 converged Fitting Repeat 3 # weights: 507 initial value 97.435448 iter 10 value 85.652812 iter 20 value 80.612890 iter 30 value 78.778221 iter 40 value 78.641012 iter 50 value 78.360989 iter 60 value 78.335691 iter 70 value 78.330135 final value 78.330091 converged Fitting Repeat 4 # weights: 507 initial value 111.366519 iter 10 value 94.060384 iter 20 value 91.681119 iter 30 value 85.787394 iter 40 value 79.289100 iter 50 value 76.864041 iter 60 value 76.501943 iter 70 value 76.457981 iter 80 value 76.447396 iter 90 value 76.406258 iter 100 value 76.385728 final value 76.385728 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.213500 iter 10 value 94.061215 iter 20 value 93.974275 iter 30 value 85.283060 iter 40 value 82.116426 iter 50 value 82.038278 iter 60 value 79.699665 iter 70 value 78.663818 iter 80 value 77.055909 iter 90 value 76.548527 iter 100 value 76.491879 final value 76.491879 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.914545 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.714781 iter 10 value 94.264222 final value 94.263148 converged Fitting Repeat 3 # weights: 103 initial value 100.394462 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 102.956300 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 94.924989 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 102.970818 iter 10 value 94.443244 iter 10 value 94.443243 iter 10 value 94.443243 final value 94.443243 converged Fitting Repeat 2 # weights: 305 initial value 102.242844 final value 94.443243 converged Fitting Repeat 3 # weights: 305 initial value 105.398237 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 101.216940 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.555912 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 101.492422 iter 10 value 94.294010 final value 94.263148 converged Fitting Repeat 2 # weights: 507 initial value 99.431719 final value 94.264858 converged Fitting Repeat 3 # weights: 507 initial value 115.683421 iter 10 value 93.538035 iter 20 value 92.768885 iter 30 value 92.767217 final value 92.767215 converged Fitting Repeat 4 # weights: 507 initial value 121.247414 iter 10 value 94.284255 iter 20 value 87.630490 iter 30 value 87.340546 iter 30 value 87.340546 iter 30 value 87.340546 final value 87.340546 converged Fitting Repeat 5 # weights: 507 initial value 103.311687 iter 10 value 87.233767 iter 20 value 84.480646 iter 30 value 84.480047 final value 84.480000 converged Fitting Repeat 1 # weights: 103 initial value 97.362960 iter 10 value 94.460270 iter 20 value 86.532241 iter 30 value 86.017712 iter 40 value 85.480820 iter 50 value 85.307115 iter 60 value 84.418794 iter 70 value 83.091558 iter 80 value 82.875060 iter 90 value 82.824780 iter 100 value 82.804015 final value 82.804015 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.784510 iter 10 value 94.489485 iter 20 value 94.370339 iter 30 value 93.438290 iter 40 value 93.075043 iter 50 value 92.935607 iter 60 value 82.642519 iter 70 value 80.792007 iter 80 value 80.617196 iter 90 value 79.984559 iter 100 value 79.673735 final value 79.673735 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 103.056120 iter 10 value 94.266033 iter 20 value 87.296016 iter 30 value 86.372269 iter 40 value 84.961458 iter 50 value 83.484939 iter 60 value 82.926589 iter 70 value 82.914686 final value 82.914683 converged Fitting Repeat 4 # weights: 103 initial value 102.428147 iter 10 value 94.491523 iter 20 value 87.314722 iter 30 value 83.185889 iter 40 value 83.111056 iter 50 value 82.638631 iter 60 value 82.438232 iter 70 value 82.413798 iter 80 value 82.411939 final value 82.411932 converged Fitting Repeat 5 # weights: 103 initial value 96.772416 iter 10 value 94.224360 iter 20 value 83.830167 iter 30 value 83.138031 iter 40 value 83.011073 iter 50 value 82.971302 iter 60 value 82.931307 iter 70 value 82.919241 final value 82.919238 converged Fitting Repeat 1 # weights: 305 initial value 109.183699 iter 10 value 94.242709 iter 20 value 85.166322 iter 30 value 82.840548 iter 40 value 82.200602 iter 50 value 81.898658 iter 60 value 81.798987 iter 70 value 81.773500 iter 80 value 81.722212 iter 90 value 81.691336 iter 100 value 81.639738 final value 81.639738 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.106283 iter 10 value 94.866895 iter 20 value 92.273046 iter 30 value 86.623423 iter 40 value 85.910159 iter 50 value 85.454962 iter 60 value 85.107212 iter 70 value 83.079660 iter 80 value 81.458596 iter 90 value 79.760968 iter 100 value 79.091306 final value 79.091306 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.024278 iter 10 value 94.005304 iter 20 value 83.796791 iter 30 value 83.231179 iter 40 value 81.759448 iter 50 value 80.820122 iter 60 value 80.066992 iter 70 value 78.764684 iter 80 value 78.490001 iter 90 value 78.196178 iter 100 value 78.134844 final value 78.134844 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.578330 iter 10 value 94.496035 iter 20 value 93.714383 iter 30 value 93.237367 iter 40 value 86.336627 iter 50 value 84.221774 iter 60 value 81.969721 iter 70 value 80.617793 iter 80 value 79.555820 iter 90 value 79.050412 iter 100 value 78.845084 final value 78.845084 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.978659 iter 10 value 95.064553 iter 20 value 83.502509 iter 30 value 83.246533 iter 40 value 82.703770 iter 50 value 82.621331 iter 60 value 82.518840 iter 70 value 82.226582 iter 80 value 80.777418 iter 90 value 79.495128 iter 100 value 78.611019 final value 78.611019 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 120.131995 iter 10 value 95.084666 iter 20 value 94.405374 iter 30 value 90.020347 iter 40 value 83.950910 iter 50 value 80.345593 iter 60 value 79.508696 iter 70 value 78.654569 iter 80 value 78.281692 iter 90 value 77.888912 iter 100 value 77.624143 final value 77.624143 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.060132 iter 10 value 93.646691 iter 20 value 84.574698 iter 30 value 82.408582 iter 40 value 80.069465 iter 50 value 78.737906 iter 60 value 78.192185 iter 70 value 77.982244 iter 80 value 77.826467 iter 90 value 77.643020 iter 100 value 77.443512 final value 77.443512 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.225352 iter 10 value 94.661185 iter 20 value 85.576702 iter 30 value 84.419286 iter 40 value 83.780784 iter 50 value 83.342650 iter 60 value 81.901683 iter 70 value 80.168972 iter 80 value 80.107014 iter 90 value 79.726342 iter 100 value 78.822110 final value 78.822110 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.117077 iter 10 value 90.678153 iter 20 value 83.370223 iter 30 value 83.016282 iter 40 value 82.947832 iter 50 value 82.683601 iter 60 value 82.213306 iter 70 value 81.158927 iter 80 value 79.635310 iter 90 value 79.468523 iter 100 value 78.658356 final value 78.658356 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.807719 iter 10 value 94.433604 iter 20 value 93.387483 iter 30 value 93.071364 iter 40 value 92.228465 iter 50 value 89.323952 iter 60 value 84.901097 iter 70 value 82.739351 iter 80 value 82.361831 iter 90 value 81.520104 iter 100 value 81.338640 final value 81.338640 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.625730 iter 10 value 93.569438 iter 10 value 93.569437 iter 10 value 93.569437 final value 93.569437 converged Fitting Repeat 2 # weights: 103 initial value 101.739774 iter 10 value 94.485948 final value 94.484218 converged Fitting Repeat 3 # weights: 103 initial value 94.670663 final value 94.485896 converged Fitting Repeat 4 # weights: 103 initial value 96.066817 final value 94.485697 converged Fitting Repeat 5 # weights: 103 initial value 104.502349 iter 10 value 94.444725 iter 20 value 93.933253 iter 30 value 85.303201 iter 40 value 85.095094 iter 50 value 85.093158 iter 60 value 85.055197 iter 70 value 84.922062 iter 80 value 84.920519 final value 84.920494 converged Fitting Repeat 1 # weights: 305 initial value 98.375071 iter 10 value 94.489094 iter 20 value 94.460750 iter 30 value 92.161689 iter 40 value 89.299457 iter 50 value 89.291369 iter 60 value 89.174155 iter 70 value 89.166868 iter 80 value 87.930467 iter 90 value 87.881455 iter 100 value 87.188952 final value 87.188952 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.190183 iter 10 value 94.489265 final value 94.484923 converged Fitting Repeat 3 # weights: 305 initial value 97.973569 iter 10 value 94.429064 iter 20 value 93.813691 final value 93.568223 converged Fitting Repeat 4 # weights: 305 initial value 104.217682 iter 10 value 94.489187 iter 20 value 94.374537 iter 30 value 85.328006 iter 40 value 85.292344 iter 50 value 85.279165 iter 60 value 85.278762 iter 70 value 84.982695 iter 80 value 81.730170 iter 90 value 81.601458 iter 100 value 81.599130 final value 81.599130 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 98.493835 iter 10 value 94.489462 iter 20 value 94.416902 iter 30 value 83.766771 iter 40 value 83.246688 iter 40 value 83.246688 iter 40 value 83.246688 final value 83.246688 converged Fitting Repeat 1 # weights: 507 initial value 101.914231 iter 10 value 87.888251 iter 20 value 87.069988 iter 30 value 86.364412 iter 40 value 86.127173 iter 50 value 86.056355 iter 60 value 86.055146 iter 70 value 85.877255 iter 80 value 85.541266 iter 90 value 84.837823 iter 100 value 81.942160 final value 81.942160 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 116.398956 iter 10 value 93.546812 iter 20 value 93.542210 iter 30 value 87.864566 iter 40 value 87.700293 final value 87.700288 converged Fitting Repeat 3 # weights: 507 initial value 123.374962 iter 10 value 94.452475 iter 20 value 94.444830 iter 30 value 92.927889 iter 40 value 85.649086 iter 50 value 85.518217 iter 60 value 85.515719 iter 70 value 85.512696 iter 80 value 85.511909 iter 90 value 85.510910 iter 100 value 84.975291 final value 84.975291 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.909558 iter 10 value 94.490385 iter 20 value 86.476530 iter 30 value 85.276653 final value 85.276567 converged Fitting Repeat 5 # weights: 507 initial value 101.898948 iter 10 value 94.491871 iter 20 value 91.370596 iter 30 value 84.494011 iter 40 value 84.486331 iter 50 value 84.485841 iter 60 value 84.476999 iter 70 value 83.558013 iter 80 value 79.015195 iter 90 value 77.943021 iter 100 value 77.136255 final value 77.136255 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.660492 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.309760 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 104.838894 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 102.057830 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 99.382573 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 99.431733 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 103.777477 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 95.399116 final value 94.484210 converged Fitting Repeat 4 # weights: 305 initial value 94.547984 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 91.696212 iter 10 value 85.749367 iter 20 value 85.492611 iter 30 value 85.421280 iter 40 value 85.403618 final value 85.403598 converged Fitting Repeat 1 # weights: 507 initial value 100.784530 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 111.207565 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 97.548809 iter 10 value 94.343244 final value 94.046703 converged Fitting Repeat 4 # weights: 507 initial value 102.920913 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 111.204905 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 96.529712 iter 10 value 94.461524 iter 20 value 88.304571 iter 30 value 86.896808 iter 40 value 86.240709 iter 50 value 86.040230 iter 60 value 85.781533 iter 70 value 84.767745 iter 80 value 82.417404 iter 90 value 82.347707 iter 100 value 82.322728 final value 82.322728 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 103.298512 iter 10 value 94.858952 iter 20 value 92.957791 iter 30 value 87.823881 iter 40 value 86.773636 iter 50 value 86.412671 iter 60 value 86.027356 iter 70 value 84.791376 iter 80 value 83.156420 iter 90 value 82.689279 iter 100 value 82.510887 final value 82.510887 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 106.592265 iter 10 value 93.058656 iter 20 value 89.537235 iter 30 value 87.210140 iter 40 value 85.360681 iter 50 value 84.696656 iter 60 value 84.597048 iter 70 value 84.431771 iter 80 value 84.269051 iter 90 value 83.820129 iter 100 value 83.648176 final value 83.648176 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.648248 iter 10 value 94.475679 iter 20 value 94.357627 iter 30 value 93.026524 iter 40 value 86.347268 iter 50 value 85.078110 iter 60 value 84.932005 iter 70 value 83.920132 iter 80 value 83.594271 iter 90 value 83.114053 iter 100 value 82.231600 final value 82.231600 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 111.426434 iter 10 value 89.478074 iter 20 value 86.528581 iter 30 value 85.485197 iter 40 value 84.321389 iter 50 value 83.269468 iter 60 value 83.131785 final value 83.127089 converged Fitting Repeat 1 # weights: 305 initial value 102.662238 iter 10 value 94.558307 iter 20 value 94.262502 iter 30 value 87.005750 iter 40 value 86.910961 iter 50 value 86.002438 iter 60 value 84.969591 iter 70 value 83.617832 iter 80 value 82.945798 iter 90 value 82.800963 iter 100 value 82.704907 final value 82.704907 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.335332 iter 10 value 95.868007 iter 20 value 93.020648 iter 30 value 87.146968 iter 40 value 85.404190 iter 50 value 84.539474 iter 60 value 83.877516 iter 70 value 83.483784 iter 80 value 83.371379 iter 90 value 83.301172 iter 100 value 82.804482 final value 82.804482 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 110.990679 iter 10 value 94.364598 iter 20 value 89.684141 iter 30 value 86.254202 iter 40 value 83.293467 iter 50 value 82.407731 iter 60 value 82.269309 iter 70 value 81.924185 iter 80 value 81.511878 iter 90 value 81.406486 iter 100 value 81.134309 final value 81.134309 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.037755 iter 10 value 94.573808 iter 20 value 91.864549 iter 30 value 88.778263 iter 40 value 87.321371 iter 50 value 82.346478 iter 60 value 81.804886 iter 70 value 81.163915 iter 80 value 80.873972 iter 90 value 80.793604 iter 100 value 80.721843 final value 80.721843 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.767949 iter 10 value 94.490762 iter 20 value 88.011410 iter 30 value 86.047703 iter 40 value 84.978081 iter 50 value 84.057643 iter 60 value 83.060271 iter 70 value 82.086955 iter 80 value 81.943471 iter 90 value 81.790770 iter 100 value 81.775540 final value 81.775540 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.978329 iter 10 value 89.877232 iter 20 value 84.618099 iter 30 value 83.261247 iter 40 value 82.096424 iter 50 value 81.906861 iter 60 value 81.673732 iter 70 value 81.344984 iter 80 value 81.225754 iter 90 value 80.909893 iter 100 value 80.170377 final value 80.170377 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 120.071700 iter 10 value 94.699704 iter 20 value 90.961653 iter 30 value 87.513856 iter 40 value 86.762446 iter 50 value 86.589054 iter 60 value 84.491993 iter 70 value 84.197194 iter 80 value 83.887006 iter 90 value 81.732217 iter 100 value 81.115585 final value 81.115585 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 127.134992 iter 10 value 94.602390 iter 20 value 94.484381 iter 30 value 89.798347 iter 40 value 87.746606 iter 50 value 86.271066 iter 60 value 86.085599 iter 70 value 84.428075 iter 80 value 82.844924 iter 90 value 81.801985 iter 100 value 81.363196 final value 81.363196 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.222793 iter 10 value 94.682393 iter 20 value 91.270590 iter 30 value 87.138101 iter 40 value 83.463462 iter 50 value 83.052392 iter 60 value 82.150827 iter 70 value 81.786152 iter 80 value 81.422954 iter 90 value 81.089698 iter 100 value 80.710253 final value 80.710253 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.954955 iter 10 value 94.433266 iter 20 value 87.184654 iter 30 value 86.243082 iter 40 value 85.913696 iter 50 value 85.669351 iter 60 value 84.372833 iter 70 value 81.949674 iter 80 value 81.572296 iter 90 value 81.021819 iter 100 value 80.888838 final value 80.888838 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.364115 final value 94.430697 converged Fitting Repeat 2 # weights: 103 initial value 98.877216 final value 94.486765 converged Fitting Repeat 3 # weights: 103 initial value 103.843028 iter 10 value 87.071531 iter 20 value 86.114764 iter 30 value 86.114076 iter 40 value 85.971017 iter 50 value 85.785850 final value 85.785773 converged Fitting Repeat 4 # weights: 103 initial value 100.428751 final value 94.486157 converged Fitting Repeat 5 # weights: 103 initial value 95.669585 final value 94.485626 converged Fitting Repeat 1 # weights: 305 initial value 95.684607 iter 10 value 94.051078 iter 20 value 94.026793 iter 30 value 94.025471 iter 40 value 94.023226 iter 50 value 87.128277 iter 60 value 86.325918 iter 70 value 83.148701 iter 80 value 80.458532 iter 90 value 79.990930 iter 100 value 79.721938 final value 79.721938 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.198222 iter 10 value 94.488938 final value 94.485125 converged Fitting Repeat 3 # weights: 305 initial value 111.354886 iter 10 value 94.488852 iter 20 value 86.817498 iter 30 value 85.837136 iter 40 value 85.660412 iter 50 value 85.659169 iter 60 value 85.552957 iter 70 value 85.361646 iter 80 value 83.425785 iter 90 value 83.112734 iter 90 value 83.112734 iter 90 value 83.112734 final value 83.112734 converged Fitting Repeat 4 # weights: 305 initial value 98.183096 iter 10 value 94.488784 iter 20 value 94.391080 iter 30 value 91.201782 iter 40 value 90.222508 final value 90.222194 converged Fitting Repeat 5 # weights: 305 initial value 101.153593 iter 10 value 94.119293 iter 20 value 93.164488 iter 30 value 92.573468 final value 92.568439 converged Fitting Repeat 1 # weights: 507 initial value 101.765432 iter 10 value 94.055004 iter 20 value 94.049346 iter 30 value 94.048850 iter 40 value 92.595327 iter 50 value 83.207795 iter 60 value 83.053606 iter 70 value 83.052929 iter 80 value 82.631730 iter 90 value 82.407354 final value 82.407329 converged Fitting Repeat 2 # weights: 507 initial value 107.638636 iter 10 value 94.492657 iter 20 value 94.484256 iter 30 value 92.192420 iter 40 value 87.566759 iter 50 value 85.665976 iter 60 value 85.662092 iter 60 value 85.662092 final value 85.662092 converged Fitting Repeat 3 # weights: 507 initial value 107.131555 iter 10 value 94.492787 iter 20 value 94.471876 iter 30 value 94.470515 iter 40 value 94.441346 iter 50 value 92.895078 iter 60 value 89.745024 iter 70 value 89.686105 iter 80 value 89.682147 final value 89.681905 converged Fitting Repeat 4 # weights: 507 initial value 104.513848 iter 10 value 94.491618 iter 20 value 94.467351 iter 30 value 94.110350 iter 40 value 89.167714 iter 50 value 85.175741 iter 60 value 83.735662 iter 70 value 83.507965 iter 80 value 83.266102 iter 90 value 80.877202 iter 100 value 80.603348 final value 80.603348 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.023329 iter 10 value 94.492436 iter 20 value 94.411619 iter 30 value 92.888675 iter 40 value 92.860941 iter 50 value 92.622218 iter 60 value 91.588626 iter 70 value 89.522033 iter 80 value 89.158426 iter 90 value 88.868164 iter 100 value 88.867602 final value 88.867602 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 152.482199 iter 10 value 117.957093 iter 20 value 115.049997 iter 30 value 106.771907 iter 40 value 105.984859 iter 50 value 105.432911 iter 60 value 105.047632 iter 70 value 103.337894 iter 80 value 102.541047 iter 90 value 101.523246 iter 100 value 100.980519 final value 100.980519 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 141.048778 iter 10 value 118.301206 iter 20 value 117.648530 iter 30 value 107.996864 iter 40 value 103.556366 iter 50 value 102.497897 iter 60 value 102.257420 iter 70 value 101.535265 iter 80 value 101.435714 iter 90 value 101.311287 iter 100 value 101.014996 final value 101.014996 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 126.860612 iter 10 value 117.876962 iter 20 value 112.662921 iter 30 value 106.523275 iter 40 value 105.953139 iter 50 value 103.684663 iter 60 value 102.580356 iter 70 value 102.520202 iter 80 value 102.489166 iter 90 value 102.296633 iter 100 value 101.411771 final value 101.411771 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 131.352221 iter 10 value 117.916834 iter 20 value 117.221230 iter 30 value 113.419339 iter 40 value 109.957576 iter 50 value 107.994486 iter 60 value 103.366821 iter 70 value 102.538684 iter 80 value 102.227652 iter 90 value 101.588832 iter 100 value 101.202445 final value 101.202445 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 141.016629 iter 10 value 117.870939 iter 20 value 117.610998 iter 30 value 117.531461 iter 40 value 112.679130 iter 50 value 108.980662 iter 60 value 108.716599 iter 70 value 108.385620 iter 80 value 106.544566 iter 90 value 105.702125 iter 100 value 105.597726 final value 105.597726 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Mon May 6 22:18:03 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 16.974 1.215 25.944
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 17.309 | 0.569 | 17.881 | |
FreqInteractors | 0.074 | 0.005 | 0.077 | |
calculateAAC | 0.013 | 0.002 | 0.016 | |
calculateAutocor | 0.123 | 0.018 | 0.141 | |
calculateCTDC | 0.023 | 0.002 | 0.024 | |
calculateCTDD | 0.163 | 0.009 | 0.172 | |
calculateCTDT | 0.075 | 0.005 | 0.079 | |
calculateCTriad | 0.135 | 0.007 | 0.143 | |
calculateDC | 0.029 | 0.003 | 0.032 | |
calculateF | 0.086 | 0.004 | 0.090 | |
calculateKSAAP | 0.029 | 0.003 | 0.031 | |
calculateQD_Sm | 0.554 | 0.045 | 0.599 | |
calculateTC | 0.517 | 0.047 | 0.565 | |
calculateTC_Sm | 0.124 | 0.006 | 0.129 | |
corr_plot | 16.676 | 0.549 | 17.227 | |
enrichfindP | 0.161 | 0.029 | 9.945 | |
enrichfind_hp | 0.014 | 0.002 | 1.179 | |
enrichplot | 0.110 | 0.002 | 0.111 | |
filter_missing_values | 0 | 0 | 0 | |
getFASTA | 0.027 | 0.005 | 4.169 | |
getHPI | 0 | 0 | 0 | |
get_negativePPI | 0.001 | 0.000 | 0.000 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.000 | 0.000 | |
plotPPI | 0.025 | 0.001 | 0.027 | |
pred_ensembel | 5.659 | 0.473 | 4.274 | |
var_imp | 17.594 | 0.509 | 18.106 | |