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This page was generated on 2024-05-07 11:32:34 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 805/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneGA 1.54.0  (landing page)
Zhenpeng Li
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/GeneGA
git_branch: RELEASE_3_19
git_last_commit: 6afaa2e
git_last_commit_date: 2024-04-30 10:22:56 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for GeneGA on kjohnson3


To the developers/maintainers of the GeneGA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GeneGA
Version: 1.54.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneGA
StartedAt: 2024-05-06 17:18:32 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 17:18:34 -0400 (Mon, 06 May 2024)
EllapsedTime: 2.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneGA
###
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* checking for file ‘GeneGA/DESCRIPTION’ ... OK
* preparing ‘GeneGA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GeneGA.Rnw’ using Sweave
Loading required package: seqinr
Loading required package: hash
hash-2.2.6.3 provided by Decision Patterns

sh: RNAfold: command not found

Error: processing vignette 'GeneGA.Rnw' failed with diagnostics:
 chunk 3 
Error in system(paste("echo ", x, "|RNAfold", sep = ""), intern = T) : 
  error in running command

--- failed re-building ‘GeneGA.Rnw’

SUMMARY: processing the following file failed:
  ‘GeneGA.Rnw’

Error: Vignette re-building failed.
Execution halted