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This page was generated on 2024-05-07 11:32:34 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 843/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenProSeq 1.8.0  (landing page)
Dongmin Jung
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/GenProSeq
git_branch: RELEASE_3_19
git_last_commit: 1065e59
git_last_commit_date: 2024-04-30 11:41:20 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for GenProSeq on kjohnson3


To the developers/maintainers of the GenProSeq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GenProSeq
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenProSeq
StartedAt: 2024-05-06 17:21:59 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 17:22:09 -0400 (Mon, 06 May 2024)
EllapsedTime: 10.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenProSeq
###
##############################################################################
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* checking for file ‘GenProSeq/DESCRIPTION’ ... OK
* preparing ‘GenProSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GenProSeq.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/keras/src/layers/reshaping/flatten.py:37: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead.
  super().__init__(**kwargs)

Quitting from lines  at lines 55-81 [unnamed-chunk-1] (GenProSeq.Rmd)
Error: processing vignette 'GenProSeq.Rmd' failed with diagnostics:
object 'combined' not found
--- failed re-building ‘GenProSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘GenProSeq.Rmd’

Error: Vignette re-building failed.
Execution halted