Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:32 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 528/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DeepPINCS 1.12.0 (landing page) Dongmin Jung
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the DeepPINCS package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DeepPINCS |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeepPINCS |
StartedAt: 2024-05-06 16:50:00 -0400 (Mon, 06 May 2024) |
EndedAt: 2024-05-06 16:50:20 -0400 (Mon, 06 May 2024) |
EllapsedTime: 19.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeepPINCS ### ############################################################################## ############################################################################## * checking for file ‘DeepPINCS/DESCRIPTION’ ... OK * preparing ‘DeepPINCS’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DeepPINCS.Rmd’ using rmarkdown /Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020 warnings.warn( Quitting from lines at lines 82-108 [unnamed-chunk-3] (DeepPINCS.Rmd) Error: processing vignette 'DeepPINCS.Rmd' failed with diagnostics: ValueError: For a `build()` method with more than one argument, all arguments should have a `_shape` suffix and match an argument from `call()`. E.g. `build(self, foo_shape, bar_shape)` For layer 'MultiLinear', Received `build()` argument `self`, which does not end in `_shape`. Run `reticulate::py_last_error()` for details. --- failed re-building ‘DeepPINCS.Rmd’ SUMMARY: processing the following file failed: ‘DeepPINCS.Rmd’ Error: Vignette re-building failed. Execution halted