Back to Mac ARM64 build report for BioC 3.19
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-05-07 11:32:32 -0400 (Tue, 07 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 552/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DeProViR 1.0.0  (landing page)
Matineh Rahmatbakhsh
Snapshot Date: 2024-05-06 14:00:02 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/DeProViR
git_branch: RELEASE_3_19
git_last_commit: 07d78d3
git_last_commit_date: 2024-04-30 11:54:04 -0400 (Tue, 30 Apr 2024)
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for DeProViR on kjohnson3


To the developers/maintainers of the DeProViR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DeProViR
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeProViR
StartedAt: 2024-05-06 16:53:20 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 16:54:04 -0400 (Mon, 06 May 2024)
EllapsedTime: 43.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeProViR
###
##############################################################################
##############################################################################


* checking for file ‘DeProViR/DESCRIPTION’ ... OK
* preparing ‘DeProViR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeProViR_tutorial.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(

Quitting from lines  at lines 218-246 [unnamed-chunk-2] (DeProViR_tutorial.Rmd)
Error: processing vignette 'DeProViR_tutorial.Rmd' failed with diagnostics:
ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 1000, 'weights': [array([[ 0.      ,  0.      ,  0.      , ...,  0.      ,  0.      ,
         0.      ],
       [-0.45433 ,  1.0234  ,  0.024278, ..., -0.43769 ,  1.0169  ,
        -0.26706 ],
       [-0.27086 ,  0.044006, -0.02026 , ..., -0.4923  ,  0.63687 ,
         0.23642 ],
       ...,
       [-0.20314 ,  0.50467 , -0.25223 , ..., -0.34618 , -0.18627 ,
        -0.31606 ],
       [ 0.29492 ,  0.56874 , -0.20245 , ..., -0.16875 ,  0.51895 ,
        -0.50086 ],
       [-0.11752 ,  0.97272 , -0.29021 , ..., -0.50598 , -0.28476 ,
        -0.70045 ]])]}
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘DeProViR_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘DeProViR_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted