| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-22 11:37:04 -0400 (Wed, 22 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 3444 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2241/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| universalmotif 1.22.0 (landing page) Benjamin Jean-Marie Tremblay
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the universalmotif package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/universalmotif.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: universalmotif |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data universalmotif |
| StartedAt: 2024-05-21 16:28:40 -0400 (Tue, 21 May 2024) |
| EndedAt: 2024-05-21 16:30:51 -0400 (Tue, 21 May 2024) |
| EllapsedTime: 130.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data universalmotif ### ############################################################################## ############################################################################## * checking for file ‘universalmotif/DESCRIPTION’ ... OK * preparing ‘universalmotif’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction.Rmd’ using rmarkdown --- finished re-building ‘Introduction.Rmd’ --- re-building ‘IntroductionToSequenceMotifs.Rmd’ using rmarkdown --- finished re-building ‘IntroductionToSequenceMotifs.Rmd’ --- re-building ‘MotifComparisonAndPvalues.Rmd’ using rmarkdown Quitting from lines 18-28 [setup] (MotifComparisonAndPvalues.Rmd) Error: processing vignette 'MotifComparisonAndPvalues.Rmd' failed with diagnostics: there is no package called 'MotifDb' --- failed re-building ‘MotifComparisonAndPvalues.Rmd’ --- re-building ‘MotifManipulation.Rmd’ using rmarkdown Quitting from lines 19-25 [setup] (MotifManipulation.Rmd) Error: processing vignette 'MotifManipulation.Rmd' failed with diagnostics: there is no package called 'MotifDb' --- failed re-building ‘MotifManipulation.Rmd’ --- re-building ‘SequenceSearches.Rmd’ using rmarkdown Quitting from lines 19-27 [setup] (SequenceSearches.Rmd) Error: processing vignette 'SequenceSearches.Rmd' failed with diagnostics: there is no package called 'ggbio' --- failed re-building ‘SequenceSearches.Rmd’ SUMMARY: processing the following files failed: ‘MotifComparisonAndPvalues.Rmd’ ‘MotifManipulation.Rmd’ ‘SequenceSearches.Rmd’ Error: Vignette re-building failed. Execution halted