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This page was generated on 2024-07-12 17:39 -0400 (Fri, 12 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4741
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4483
merida1macOS 12.7.4 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4512
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2104/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.42.0  (landing page)
Hai Fang
Snapshot Date: 2024-07-10 14:00 -0400 (Wed, 10 Jul 2024)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: RELEASE_3_19
git_last_commit: 7ffe698
git_last_commit_date: 2024-04-30 10:33:03 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for supraHex on nebbiolo1

To the developers/maintainers of the supraHex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: supraHex
Version: 1.42.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings supraHex_1.42.0.tar.gz
StartedAt: 2024-07-11 04:11:03 -0400 (Thu, 11 Jul 2024)
EndedAt: 2024-07-11 04:12:06 -0400 (Thu, 11 Jul 2024)
EllapsedTime: 63.1 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings supraHex_1.42.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/supraHex.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0630.0030.067
sCompReorder2.0370.0322.069
sDistance0.2350.0000.235
sDmat0.2570.0000.257
sDmatCluster0.3420.0030.346
sDmatMinima0.2690.0010.269
sHexDist0.0080.0000.007
sHexGrid0.0020.0000.002
sHexGridVariant0.0020.0000.003
sHexPolygon0.0850.0000.085
sInitial0.0080.0000.007
sMapOverlay0.350.000.35
sNeighAny0.0110.0000.011
sNeighDirect0.0080.0000.008
sPipeline0.0000.0000.001
sTopology0.0410.0030.045
sTrainBatch0.0470.0010.048
sTrainSeq0.3180.0000.318
sTrainology0.0080.0000.008
sWriteData0.7760.0520.841
visColoralpha0.0030.0000.004
visColorbar0.0210.0000.021
visColormap0.0000.0030.002
visCompReorder2.8780.0732.951
visDmatCluster0.0000.0000.001
visDmatHeatmap000
visHeatmap0.0910.0070.099
visHeatmapAdv0.2850.0120.298
visHexAnimate0.0010.0000.002
visHexBarplot0.6540.0120.666
visHexComp0.2390.0000.239
visHexGrid0.2410.0000.242
visHexMapping1.2660.0361.303
visHexMulComp0.8460.0360.882
visHexPattern1.5080.0561.565
visKernels0.0120.0000.013
visTreeBSclust000
visTreeBootstrap000
visVp0.0120.0020.014