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This page was generated on 2024-05-09 11:41:29 -0400 (Thu, 09 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4748
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4484
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4514
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2003/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
slingshot 2.12.0  (landing page)
Kelly Street
Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/slingshot
git_branch: RELEASE_3_19
git_last_commit: 2e8da38
git_last_commit_date: 2024-04-30 11:07:02 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for slingshot on kunpeng2


To the developers/maintainers of the slingshot package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/slingshot.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: slingshot
Version: 2.12.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data slingshot
StartedAt: 2024-05-09 03:42:12 -0000 (Thu, 09 May 2024)
EndedAt: 2024-05-09 03:43:21 -0000 (Thu, 09 May 2024)
EllapsedTime: 69.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data slingshot
###
##############################################################################
##############################################################################


* checking for file ‘slingshot/DESCRIPTION’ ... OK
* preparing ‘slingshot’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘conditionsVignette.Rmd’ using rmarkdown
--- finished re-building ‘conditionsVignette.Rmd’

--- re-building ‘vignette.Rmd’ using rmarkdown

Quitting from lines  at lines 276-277 [sling_sce] (vignette.Rmd)
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
At vendor/cigraph/src/constructors/adjacency.c:535 : Adjacency matrix should be symmetric to produce an undirected graph. Invalid value
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted