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This page was generated on 2024-05-10 11:37:18 -0400 (Fri, 10 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4751
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4485
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4515
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1855/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sampleClassifier 1.28.0  (landing page)
Khadija El Amrani
Snapshot Date: 2024-05-09 14:00:17 -0400 (Thu, 09 May 2024)
git_url: https://git.bioconductor.org/packages/sampleClassifier
git_branch: RELEASE_3_19
git_last_commit: 9fe33a6
git_last_commit_date: 2024-04-30 11:30:32 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for sampleClassifier on palomino3


To the developers/maintainers of the sampleClassifier package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sampleClassifier.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: sampleClassifier
Version: 1.28.0
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sampleClassifier.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings sampleClassifier_1.28.0.tar.gz
StartedAt: 2024-05-10 05:53:48 -0400 (Fri, 10 May 2024)
EndedAt: 2024-05-10 05:58:57 -0400 (Fri, 10 May 2024)
EllapsedTime: 308.7 seconds
RetCode: 0
Status:   OK  
CheckDir: sampleClassifier.Rcheck
Warnings: 0

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:sampleClassifier.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings sampleClassifier_1.28.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/sampleClassifier.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'sampleClassifier/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sampleClassifier' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sampleClassifier' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     72.50   1.08   74.30
classifyProfile            36.44   2.00   39.19
get.heatmap                28.28   1.84   30.14
classifyProfile.svm        27.86   1.85   29.74
classifyProfile.rnaseq.svm 11.98   0.62   12.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

sampleClassifier.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL sampleClassifier
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'sampleClassifier' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sampleClassifier)

Tests output


Example timings

sampleClassifier.Rcheck/sampleClassifier-Ex.timings

nameusersystemelapsed
classifyProfile36.44 2.0039.19
classifyProfile.rnaseq72.50 1.0874.30
classifyProfile.rnaseq.svm11.98 0.6212.61
classifyProfile.svm27.86 1.8529.74
get.heatmap28.28 1.8430.14
sampleClassifier-package000