Adria Caballe
| Snapshot Date: 2024-05-21 14:00:15 -0400 (Tue, 21 May 2024) |
| git_url: https://git.bioconductor.org/packages/roastgsa |
| git_branch: RELEASE_3_19 |
| git_last_commit: 777cb72 |
| git_last_commit_date: 2024-04-30 11:50:54 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-22 11:36:55 -0400 (Wed, 22 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 3444 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1804/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| roastgsa 1.2.0 (landing page) Adria Caballe
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the roastgsa package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/roastgsa.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: roastgsa |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data roastgsa |
| StartedAt: 2024-05-21 16:18:11 -0400 (Tue, 21 May 2024) |
| EndedAt: 2024-05-21 16:18:28 -0400 (Tue, 21 May 2024) |
| EllapsedTime: 17.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data roastgsa ### ############################################################################## ############################################################################## * checking for file ‘roastgsa/DESCRIPTION’ ... OK * preparing ‘roastgsa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘roastgsaExample_RNAseq.Rmd’ using rmarkdown Quitting from lines 78-84 [unnamed-chunk-3] (roastgsaExample_RNAseq.Rmd) Error: processing vignette 'roastgsaExample_RNAseq.Rmd' failed with diagnostics: there is no package called 'DESeq2' --- failed re-building ‘roastgsaExample_RNAseq.Rmd’ --- re-building ‘roastgsaExample_genesetcollections.Rmd’ using rmarkdown --- finished re-building ‘roastgsaExample_genesetcollections.Rmd’ --- re-building ‘roastgsaExample_main.Rmd’ using rmarkdown Quitting from lines 68-75 [unnamed-chunk-2] (roastgsaExample_main.Rmd) Error: processing vignette 'roastgsaExample_main.Rmd' failed with diagnostics: there is no package called 'GSEABenchmarkeR' --- failed re-building ‘roastgsaExample_main.Rmd’ SUMMARY: processing the following files failed: ‘roastgsaExample_RNAseq.Rmd’ ‘roastgsaExample_main.Rmd’ Error: Vignette re-building failed. Execution halted