Multiple platform build/check report for BioC 3.19 - BUILD BIN results for rhdf5client on palomino3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4751
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4485
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4515
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the rhdf5client package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5client.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

Summary

Package: rhdf5client

Version: 1.26.0

Command: rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.26.0.tar.gz

StartedAt: 2024-05-16 09:18:57 -0400 (Thu, 16 May 2024)

EndedAt: 2024-05-16 09:19:27 -0400 (Thu, 16 May 2024)

EllapsedTime: 30.8 seconds

RetCode: 0

Status: OK

PackageFile: rhdf5client_1.26.0.zip

PackageFileSize: 987.2 KiB

Command output

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### Running command:
###
###   rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.26.0.tar.gz
###
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* installing *source* package 'rhdf5client' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:52: warning: 'rip' may be used uninitialized [-Wmaybe-uninitialized]
  101 |     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
      |                                                    ^
extract.c:89:8: note: 'rip' was declared here
   89 |   int *rip;
      |        ^~~
extract.c:101:42: warning: 'rdp' may be used uninitialized [-Wmaybe-uninitialized]
  101 |     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
      |                                          ^
extract.c:90:11: note: 'rdp' was declared here
   90 |   double *rdp;
      |           ^~~
gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rhdf5client' as rhdf5client_1.26.0.zip
* DONE (rhdf5client)