Mike Jiang
| Snapshot Date: 2024-05-16 14:00:15 -0400 (Thu, 16 May 2024) |
| git_url: https://git.bioconductor.org/packages/ncdfFlow |
| git_branch: RELEASE_3_19 |
| git_last_commit: c0217da |
| git_last_commit_date: 2024-04-30 10:26:17 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-17 11:37:10 -0400 (Fri, 17 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4515 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1407/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ncdfFlow 2.50.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the ncdfFlow package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ncdfFlow.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ncdfFlow |
| Version: 2.50.0 |
| Command: rm -rf ncdfFlow.buildbin-libdir && mkdir ncdfFlow.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=ncdfFlow.buildbin-libdir ncdfFlow_2.50.0.tar.gz |
| StartedAt: 2024-05-17 09:05:00 -0400 (Fri, 17 May 2024) |
| EndedAt: 2024-05-17 09:05:28 -0400 (Fri, 17 May 2024) |
| EllapsedTime: 27.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: ncdfFlow_2.50.0.zip |
| PackageFileSize: 1.882 MiB |
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### Running command:
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### rm -rf ncdfFlow.buildbin-libdir && mkdir ncdfFlow.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=ncdfFlow.buildbin-libdir ncdfFlow_2.50.0.tar.gz
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* installing *source* package 'ncdfFlow' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/cpp11/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hdfFlow.cpp -o hdfFlow.o
hdfFlow.cpp: In function 'void readSlice_cpp(hid_t, hid_t, hid_t, std::vector<int>, int, int, double*, bool)':
hdfFlow.cpp:508:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
508 | if(sampleIndx >= nSample)
| ~~~~~~~~~~~^~~~~~~~~~
hdfFlow.cpp:493:21: warning: variable 'status' set but not used [-Wunused-but-set-variable]
493 | herr_t status;
| ^~~~~~
mkdir -p "F:/biocbuild/bbs-3.19-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/x64"
ar rs "F:/biocbuild/bbs-3.19-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/x64/libncdfFlow.a" cpp11.o hdfFlow.o
C:\rtools44\x86_64-w64-mingw32.static.posix\bin\ar.exe: creating F:/biocbuild/bbs-3.19-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/lib/x64/libncdfFlow.a
g++ -shared -s -static-libgcc -o ncdfFlow.dll tmp.def cpp11.o hdfFlow.o -LF:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5_cpp -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/meat/ncdfFlow.buildbin-libdir/00LOCK-ncdfFlow/00new/ncdfFlow/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ncdfFlow' as ncdfFlow_2.50.0.zip
* DONE (ncdfFlow)