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This page was generated on 2024-05-09 11:38:12 -0400 (Thu, 09 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4748
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4484
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4514
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1007/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCheck 1.34.0  (landing page)
Weiliang Qiu
Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/iCheck
git_branch: RELEASE_3_19
git_last_commit: 4e9fb55
git_last_commit_date: 2024-04-30 10:46:00 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for iCheck on palomino3


To the developers/maintainers of the iCheck package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCheck.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: iCheck
Version: 1.34.0
Command: chmod a+r iCheck -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data iCheck
StartedAt: 2024-05-08 19:35:31 -0400 (Wed, 08 May 2024)
EndedAt: 2024-05-08 19:36:51 -0400 (Wed, 08 May 2024)
EllapsedTime: 80.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r iCheck -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data iCheck
###
##############################################################################
##############################################################################


* checking for file 'iCheck/DESCRIPTION' ... OK
* preparing 'iCheck':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to remove the existing 'INDEX'
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'iCheck.Rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: lumi
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "iCheck.tex" ' had status 1033
Error: processing vignette 'iCheck.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'iCheck.pdf' for vignette with name 'iCheck' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\RtmpeCfn9S\Rbuild370831a676b8\iCheck\vignettes': 'iCheck-004.pdf' (5923 bytes), 'iCheck-005.pdf' (14623 bytes), 'iCheck-007.pdf' (14619 bytes), 'iCheck-008.pdf' (99455 bytes), 'iCheck-009.pdf' (6411 bytes), 'iCheck-011.pdf' (6459 bytes), 'iCheck-014.pdf' (6051 bytes), 'iCheck-016.pdf' (6140 bytes), 'iCheck-020.pdf' (71217 bytes), 'iCheck-021.pdf' (58208 bytes), 'iCheck-concordance.tex' (716 bytes), 'iCheck.Rnw' (21763 bytes), 'iCheck.tex' (35172 bytes)
--- failed re-building 'iCheck.Rnw'

SUMMARY: processing the following file failed:
  'iCheck.Rnw'

Error: Vignette re-building failed.
Execution halted