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This page was generated on 2024-03-04 11:39:14 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 777/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDRimport 1.1.6  (landing page)
Arkadiusz Gladki
Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/gDRimport
git_branch: devel
git_last_commit: 78c1d9c
git_last_commit_date: 2024-02-27 09:57:12 -0500 (Tue, 27 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

CHECK results for gDRimport on merida1


To the developers/maintainers of the gDRimport package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gDRimport
Version: 1.1.6
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.1.6.tar.gz
StartedAt: 2024-03-02 04:17:00 -0500 (Sat, 02 Mar 2024)
EndedAt: 2024-03-02 04:23:40 -0500 (Sat, 02 Mar 2024)
EllapsedTime: 399.5 seconds
RetCode: 0
Status:   OK  
CheckDir: gDRimport.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.1.6.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/gDRimport.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.1.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
convert_MAE_to_PSet 8.203  0.559  10.257
import_D300         6.591  0.783   9.219
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

gDRimport.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRimport
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘gDRimport’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gDRimport)

Tests output

gDRimport.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(gDRimport)
> 
> test_check("gDRimport")
INFO [2024-03-02 04:22:51] Manifest loaded successfully
INFO [2024-03-02 04:22:51] Manifest loaded successfully
INFO [2024-03-02 04:22:51] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:22:52] Plate 201904190a read; 384 wells
INFO [2024-03-02 04:22:52] Plate 201904190b read; 384 wells
INFO [2024-03-02 04:22:52] Plate 201904190c read; 384 wells
INFO [2024-03-02 04:22:52] Plate 201904190d read; 384 wells
INFO [2024-03-02 04:22:52] Plate 201904190e read; 384 wells
INFO [2024-03-02 04:22:52] Plate 201904190f read; 384 wells
INFO [2024-03-02 04:22:52] File done
INFO [2024-03-02 04:22:52] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:22:53] Plate 201904197a read; 384 wells
INFO [2024-03-02 04:22:53] Plate 201904197b read; 384 wells
INFO [2024-03-02 04:22:53] Plate 201904197c read; 384 wells
INFO [2024-03-02 04:22:53] Plate 201904197d read; 384 wells
INFO [2024-03-02 04:22:53] Plate 201904197e read; 384 wells
INFO [2024-03-02 04:22:53] Plate 201904197f read; 384 wells
INFO [2024-03-02 04:22:53] File done
INFO [2024-03-02 04:22:53] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:22:54] Plate 201904190a read; 384 wells
INFO [2024-03-02 04:22:54] Plate 201904190b read; 384 wells
INFO [2024-03-02 04:22:54] Plate 201904190c read; 384 wells
INFO [2024-03-02 04:22:54] Plate 201904190d read; 384 wells
INFO [2024-03-02 04:22:54] Plate 201904190e read; 384 wells
INFO [2024-03-02 04:22:54] Plate 201904190f read; 384 wells
INFO [2024-03-02 04:22:54] File done
INFO [2024-03-02 04:22:54] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:22:55] Plate 201904197a read; 384 wells
INFO [2024-03-02 04:22:55] Plate 201904197b read; 384 wells
INFO [2024-03-02 04:22:55] Plate 201904197c read; 384 wells
INFO [2024-03-02 04:22:55] Plate 201904197d read; 384 wells
INFO [2024-03-02 04:22:55] Plate 201904197e read; 384 wells
INFO [2024-03-02 04:22:55] Plate 201904197f read; 384 wells
INFO [2024-03-02 04:22:55] File done
INFO [2024-03-02 04:22:55] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:22:56] Plate 201904190a read; 384 wells
INFO [2024-03-02 04:22:56] Plate 201904190b read; 384 wells
INFO [2024-03-02 04:22:56] Plate 201904190c read; 384 wells
INFO [2024-03-02 04:22:56] Plate 201904190d read; 384 wells
INFO [2024-03-02 04:22:57] Plate 201904190e read; 384 wells
INFO [2024-03-02 04:22:57] Plate 201904190f read; 384 wells
INFO [2024-03-02 04:22:57] File done
INFO [2024-03-02 04:22:57] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-03-02 04:22:57] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-03-02 04:22:57] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-03-02 04:22:58] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-03-02 04:22:58] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-03-02 04:22:59] Loading Template_7daytreated.xlsx
INFO [2024-03-02 04:22:59] Loading Template_Untreated.xlsx
INFO [2024-03-02 04:22:59] Templates loaded successfully!
INFO [2024-03-02 04:22:59] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-03-02 04:22:59] Loading Template_7daytreated.xlsx
INFO [2024-03-02 04:23:00] Loading Template_Untreated.xlsx
INFO [2024-03-02 04:23:00] Templates loaded successfully!
INFO [2024-03-02 04:23:00] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:00] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-03-02 04:23:00] Templates loaded successfully!
INFO [2024-03-02 04:23:00] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:00] Loading Template_7daytreated.xlsx
INFO [2024-03-02 04:23:00] Templates loaded successfully!
INFO [2024-03-02 04:23:00] Manifest loaded successfully
INFO [2024-03-02 04:23:00] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:01] Loading Template_7daytreated.xlsx
INFO [2024-03-02 04:23:01] Loading Template_Untreated.xlsx
INFO [2024-03-02 04:23:01] Templates loaded successfully!
INFO [2024-03-02 04:23:01] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:23:02] Plate 201904190a read; 384 wells
INFO [2024-03-02 04:23:02] Plate 201904190b read; 384 wells
INFO [2024-03-02 04:23:02] Plate 201904190c read; 384 wells
INFO [2024-03-02 04:23:02] Plate 201904190d read; 384 wells
INFO [2024-03-02 04:23:02] Plate 201904190e read; 384 wells
INFO [2024-03-02 04:23:02] Plate 201904190f read; 384 wells
INFO [2024-03-02 04:23:02] File done
INFO [2024-03-02 04:23:02] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-03-02 04:23:03] Plate 201904197a read; 384 wells
INFO [2024-03-02 04:23:03] Plate 201904197b read; 384 wells
INFO [2024-03-02 04:23:03] Plate 201904197c read; 384 wells
INFO [2024-03-02 04:23:03] Plate 201904197d read; 384 wells
INFO [2024-03-02 04:23:03] Plate 201904197e read; 384 wells
INFO [2024-03-02 04:23:03] Plate 201904197f read; 384 wells
INFO [2024-03-02 04:23:03] File done
INFO [2024-03-02 04:23:03] Manifest loaded successfully
INFO [2024-03-02 04:23:04] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:04] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-03-02 04:23:04] Templates loaded successfully!
INFO [2024-03-02 04:23:04] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-03-02 04:23:04] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-03-02 04:23:05] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-03-02 04:23:05] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-03-02 04:23:06] Manifest loaded successfully
INFO [2024-03-02 04:23:06] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:06] Loading Project40.treated.template.xlsx
INFO [2024-03-02 04:23:06] Loading Project40.untreated.template.xlsx
INFO [2024-03-02 04:23:06] Templates loaded successfully!
INFO [2024-03-02 04:23:06] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-03-02 04:23:06] Plate H0109269D00 read; 384 wells
INFO [2024-03-02 04:23:06] File done
INFO [2024-03-02 04:23:06] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-03-02 04:23:06] Plate H0109269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0309269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0309269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0409269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0409269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0509269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0509269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0609269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0609269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0709269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0709269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0809269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0809269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0909269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H0909269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H1109269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H1109269D01 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-03-02 04:23:07] Plate H1209269D00 read; 384 wells
INFO [2024-03-02 04:23:07] File done
INFO [2024-03-02 04:23:07] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate H1209269D01 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate H1409269D00 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate H1409269D01 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate K0209269D00 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate K0209269D01 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate K0809269D00 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate K0809269D01 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate K1009269D00 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-03-02 04:23:08] Plate K1009269D01 read; 384 wells
INFO [2024-03-02 04:23:08] File done
INFO [2024-03-02 04:23:08] Manifest loaded successfully
INFO [2024-03-02 04:23:08] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:09] Loading Template_7daytreated.xlsx
INFO [2024-03-02 04:23:09] Loading Template_Untreated.xlsx
INFO [2024-03-02 04:23:09] Templates loaded successfully!
INFO [2024-03-02 04:23:09] Manifest loaded successfully
INFO [2024-03-02 04:23:09] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-03-02 04:23:09] Loading Template_7daytreated.xlsx
INFO [2024-03-02 04:23:10] Loading Template_Untreated.xlsx
INFO [2024-03-02 04:23:10] Templates loaded successfully!
WARN [2024-03-02 04:23:14] Metadata field names for  cannot contain spaces --> corrected to: Gnumber
WARN [2024-03-02 04:23:14] Header Gnumber in  corrected to Gnumber
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 126 ]
> 
> 
> proc.time()
   user  system elapsed 
 82.474   5.313 103.702 

Example timings

gDRimport.Rcheck/gDRimport-Ex.timings

nameusersystemelapsed
check_metadata_names0.1380.0190.195
convert_MAE_to_PSet 8.203 0.55910.257
convert_pset_to_df0.2920.0360.394
detect_file_format0.5570.0210.695
getPSet0.2980.0160.375
get_exception_data0.1130.0020.134
get_test_D300_data0.0030.0020.006
get_test_EnVision_data0.0040.0020.009
get_test_Tecan_data0.0020.0010.003
get_test_data0.0050.0010.007
import_D3006.5910.7839.219
is_readable_v0.0030.0010.004
load_data2.7930.1353.703
load_manifest0.0950.0070.176
load_results2.1640.0762.813
load_templates0.4460.0540.647
manifest_path-method0.0030.0010.004
parse_D300_xml2.5060.0323.180
read_excel_to_dt0.0440.0220.111
result_path-method0.0040.0010.004
setEnvForPSet0.0010.0000.002
standardize_record_values0.0000.0010.001
template_path-method0.0040.0010.004