Back to Multiple platform build/check report for BioC 3.19:   simplified   long
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-05-17 11:37:39 -0400 (Fri, 17 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4751
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4485
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4515
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 134/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basilisk 1.16.0  (landing page)
Aaron Lun
Snapshot Date: 2024-05-16 14:00:15 -0400 (Thu, 16 May 2024)
git_url: https://git.bioconductor.org/packages/basilisk
git_branch: RELEASE_3_19
git_last_commit: 0a27ae6
git_last_commit_date: 2024-04-30 11:20:50 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    TIMEOUT    OK  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for basilisk on lconway


To the developers/maintainers of the basilisk package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: basilisk
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.16.0.tar.gz
StartedAt: 2024-05-16 19:13:46 -0400 (Thu, 16 May 2024)
EndedAt: 2024-05-16 19:53:46 -0400 (Thu, 16 May 2024)
EllapsedTime: 2400.5 seconds
RetCode: None
Status:   TIMEOUT  
CheckDir: basilisk.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
basiliskStart          357.280 48.411 447.822
createLocalBasiliskEnv 119.938 21.714 164.958
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’

Installation output

basilisk.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘basilisk’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (basilisk)

Tests output

basilisk.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.9.12
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-22_osx64_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-22_osx64_openblas
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
  liblapack          conda-forge/osx-64::liblapack-3.9.0-22_osx64_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.27-openmp_hfef2a42_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.5-h39e0ece_0
  numpy              conda-forge/osx-64::numpy-1.26.4-py39h28c39a1_0
  pandas             conda-forge/osx-64::pandas-1.4.3-py39hf72b562_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  python_abi         conda-forge/osx-64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - pandas=1.4.2
    - python-dateutil=2.8.1
    - python=3.9.12
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-22_osx64_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-22_osx64_openblas
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
  liblapack          conda-forge/osx-64::liblapack-3.9.0-22_osx64_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.27-openmp_hfef2a42_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.5-h39e0ece_0
  numpy              conda-forge/osx-64::numpy-1.26.4-py39h28c39a1_0
  pandas             conda-forge/osx-64::pandas-1.4.2-py39hf72b562_2
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  python_abi         conda-forge/osx-64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=2.7


The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  certifi            conda-forge/osx-64::certifi-2019.11.28-py27h8c360ce_1
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libffi             conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-1.1.1w-h8a1eda9_0
  pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
  python             conda-forge/osx-64::python-2.7.15-h8e446fc_1011_cpython
  python_abi         conda-forge/osx-64::python_abi-2.7-1_cp27m
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/osx-64::setuptools-44.0.0-py27_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  zlib               conda-forge/osx-64::zlib-1.2.13-h8a1eda9_5


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python-dateutil=2.8.1
    - python=3.9.12
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
  Using cached pandas-1.4.2-cp39-cp39-macosx_10_9_x86_64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.9/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.18.5 (from pandas==1.4.2)
  Using cached numpy-1.26.4-cp39-cp39-macosx_10_9_x86_64.whl.metadata (61 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.9/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp39-cp39-macosx_10_9_x86_64.whl (11.1 MB)
Using cached numpy-1.26.4-cp39-cp39-macosx_10_9_x86_64.whl (20.6 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-1.26.4 pandas-1.4.2
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Processing /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/basilisk/example/inst/test_dummy
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
  Building wheel for test_dummy (setup.py): started
  Building wheel for test_dummy (setup.py): finished with status 'done'
  Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1281 sha256=0c67dc4030fbbb050fd13828cf8884651d25d98ac731bc904208bb52de782463
  Stored in directory: /private/tmp/pip-ephem-wheel-cache-y24ctapk/wheels/06/ea/2c/64b176a5f0e0d5c54a10e7c2192ba5c12db574a01cb72ede1f
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - whheeeeeeeeeeeeeeeeee=0.0.1

Current channels:

  - https://conda.anaconda.org/conda-forge/osx-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/osx-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.


trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-MacOSX-x86_64.sh'
Content type 'application/x-sh' length 58693864 bytes (56.0 MB)
==================================================
downloaded 56.0 MB

PREFIX=/tmp/RtmpIimNYw/file35a541c2ecb9/1.16.0/0
Unpacking payload ...

  0%|          | 0/36 [00:00<?, ?it/s]
Extracting : cffi-1.15.0-py39hc55c11b_1.conda:   0%|          | 0/36 [00:00<?, ?it/s]
Extracting : cffi-1.15.0-py39hc55c11b_1.conda:   3%|▎         | 1/36 [00:00<00:20,  1.71it/s]
Extracting : openssl-1.1.1n-hca72f7f_0.conda:   3%|▎         | 1/36 [00:01<00:20,  1.71it/s] 
Extracting : openssl-1.1.1n-hca72f7f_0.conda:   6%|▌         | 2/36 [00:01<00:25,  1.32it/s]
Extracting : certifi-2021.10.8-py39hecd8cb5_2.conda:   6%|▌         | 2/36 [00:01<00:25,  1.32it/s]
Extracting : conda-package-handling-1.8.1-py39hca72f7f_0.conda:   8%|▊         | 3/36 [00:01<00:24,  1.32it/s]
Extracting : libffi-3.3-hb1e8313_2.conda:  11%|█         | 4/36 [00:01<00:24,  1.32it/s]                      
Extracting : ruamel_yaml-0.15.100-py39h9ed2024_0.conda:  14%|█▍        | 5/36 [00:01<00:23,  1.32it/s]
Extracting : requests-2.27.1-pyhd3eb1b0_0.conda:  17%|█▋        | 6/36 [00:01<00:22,  1.32it/s]       
Extracting : ca-certificates-2022.3.29-hecd8cb5_1.conda:  19%|█▉        | 7/36 [00:01<00:21,  1.32it/s]
Extracting : pysocks-1.7.1-py39hecd8cb5_0.conda:  22%|██▏       | 8/36 [00:01<00:21,  1.32it/s]        
Extracting : zlib-1.2.12-h4dc903c_1.conda:  25%|██▌       | 9/36 [00:01<00:20,  1.32it/s]      
Extracting : six-1.16.0-pyhd3eb1b0_1.conda:  28%|██▊       | 10/36 [00:01<00:19,  1.32it/s]
Extracting : ncurses-6.3-hca72f7f_2.conda:  31%|███       | 11/36 [00:03<00:18,  1.32it/s] 
Extracting : ncurses-6.3-hca72f7f_2.conda:  33%|███▎      | 12/36 [00:03<00:07,  3.35it/s]
Extracting : colorama-0.4.4-pyhd3eb1b0_0.conda:  33%|███▎      | 12/36 [00:03<00:07,  3.35it/s]
Extracting : wheel-0.37.1-pyhd3eb1b0_0.conda:  36%|███▌      | 13/36 [00:03<00:06,  3.35it/s]  
Extracting : brotlipy-0.7.0-py39h9ed2024_1003.conda:  39%|███▉      | 14/36 [00:03<00:06,  3.35it/s]
Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda:  42%|████▏     | 15/36 [00:03<00:06,  3.35it/s]
Extracting : tk-8.6.11-h7bc2e8c_0.conda:  44%|████▍     | 16/36 [00:03<00:05,  3.35it/s]                 
Extracting : pycosat-0.6.3-py39h9ed2024_0.conda:  47%|████▋     | 17/36 [00:03<00:05,  3.35it/s]
Extracting : sqlite-3.38.2-h707629a_0.conda:  50%|█████     | 18/36 [00:03<00:05,  3.35it/s]    
Extracting : readline-8.1.2-hca72f7f_1.conda:  53%|█████▎    | 19/36 [00:03<00:05,  3.35it/s]
Extracting : pycparser-2.21-pyhd3eb1b0_0.conda:  56%|█████▌    | 20/36 [00:03<00:04,  3.35it/s]
Extracting : python-3.9.12-hdfd78df_0.conda:  58%|█████▊    | 21/36 [00:04<00:04,  3.35it/s]   
Extracting : python-3.9.12-hdfd78df_0.conda:  61%|██████    | 22/36 [00:04<00:02,  6.52it/s]
Extracting : pyopenssl-22.0.0-pyhd3eb1b0_0.conda:  61%|██████    | 22/36 [00:04<00:02,  6.52it/s]
Extracting : pip-21.2.4-py39hecd8cb5_0.conda:  64%|██████▍   | 23/36 [00:04<00:01,  6.52it/s]    
Extracting : conda-4.12.0-py39hecd8cb5_0.conda:  67%|██████▋   | 24/36 [00:05<00:01,  6.52it/s]
Extracting : conda-4.12.0-py39hecd8cb5_0.conda:  69%|██████▉   | 25/36 [00:05<00:01,  5.73it/s]
Extracting : cryptography-36.0.0-py39hf6deb26_0.conda:  69%|██████▉   | 25/36 [00:05<00:01,  5.73it/s]
Extracting : urllib3-1.26.8-pyhd3eb1b0_0.conda:  72%|███████▏  | 26/36 [00:05<00:01,  5.73it/s]       
Extracting : python.app-3-py39hca72f7f_0.conda:  75%|███████▌  | 27/36 [00:05<00:01,  5.73it/s]
Extracting : conda-content-trust-0.1.1-pyhd3eb1b0_0.conda:  78%|███████▊  | 28/36 [00:05<00:01,  5.73it/s]
Extracting : idna-3.3-pyhd3eb1b0_0.conda:  81%|████████  | 29/36 [00:05<00:01,  5.73it/s]                 
Extracting : tzdata-2022a-hda174b7_0.conda:  83%|████████▎ | 30/36 [00:05<00:01,  5.73it/s]
Extracting : xz-5.2.5-h1de35cc_0.conda:  86%|████████▌ | 31/36 [00:05<00:00,  5.73it/s]    
Extracting : libcxx-12.0.0-h2f01273_0.conda:  89%|████████▉ | 32/36 [00:05<00:00,  5.73it/s]
Extracting : yaml-0.2.5-haf1e3a3_0.conda:  92%|█████████▏| 33/36 [00:05<00:00,  5.73it/s]   
Extracting : tqdm-4.63.0-pyhd3eb1b0_0.conda:  94%|█████████▍| 34/36 [00:05<00:00,  5.73it/s]
Extracting : setuptools-61.2.0-py39hecd8cb5_0.conda:  97%|█████████▋| 35/36 [00:05<00:00,  5.73it/s]
                                                                                                    
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/RtmpIimNYw/file35a541c2ecb9/1.16.0/0

  added / updated specs:
    - brotlipy==0.7.0=py39h9ed2024_1003
    - ca-certificates==2022.3.29=hecd8cb5_1
    - certifi==2021.10.8=py39hecd8cb5_2
    - cffi==1.15.0=py39hc55c11b_1
    - charset-normalizer==2.0.4=pyhd3eb1b0_0
    - colorama==0.4.4=pyhd3eb1b0_0
    - conda-content-trust==0.1.1=pyhd3eb1b0_0
    - conda-package-handling==1.8.1=py39hca72f7f_0
    - conda==4.12.0=py39hecd8cb5_0
    - cryptography==36.0.0=py39hf6deb26_0
    - idna==3.3=pyhd3eb1b0_0
    - libcxx==12.0.0=h2f01273_0
    - libffi==3.3=hb1e8313_2
    - ncurses==6.3=hca72f7f_2
    - openssl==1.1.1n=hca72f7f_0
    - pip==21.2.4=py39hecd8cb5_0
    - pycosat==0.6.3=py39h9ed2024_0
    - pycparser==2.21=pyhd3eb1b0_0
    - pyopenssl==22.0.0=pyhd3eb1b0_0
    - pysocks==1.7.1=py39hecd8cb5_0
    - python.app==3=py39hca72f7f_0
    - python==3.9.12=hdfd78df_0
    - readline==8.1.2=hca72f7f_1
    - requests==2.27.1=pyhd3eb1b0_0
    - ruamel_yaml==0.15.100=py39h9ed2024_0
    - setuptools==61.2.0=py39hecd8cb5_0
    - six==1.16.0=pyhd3eb1b0_1
    - sqlite==3.38.2=h707629a_0
    - tk==8.6.11=h7bc2e8c_0
    - tqdm==4.63.0=pyhd3eb1b0_0
    - tzdata==2022a=hda174b7_0
    - urllib3==1.26.8=pyhd3eb1b0_0
    - wheel==0.37.1=pyhd3eb1b0_0
    - xz==5.2.5=h1de35cc_0
    - yaml==0.2.5=haf1e3a3_0
    - zlib==1.2.12=h4dc903c_1


The following NEW packages will be INSTALLED:

  brotlipy           pkgs/main/osx-64::brotlipy-0.7.0-py39h9ed2024_1003
  ca-certificates    pkgs/main/osx-64::ca-certificates-2022.3.29-hecd8cb5_1
  certifi            pkgs/main/osx-64::certifi-2021.10.8-py39hecd8cb5_2
  cffi               pkgs/main/osx-64::cffi-1.15.0-py39hc55c11b_1
  charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
  colorama           pkgs/main/noarch::colorama-0.4.4-pyhd3eb1b0_0
  conda              pkgs/main/osx-64::conda-4.12.0-py39hecd8cb5_0
  conda-content-tru~ pkgs/main/noarch::conda-content-trust-0.1.1-pyhd3eb1b0_0
  conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.8.1-py39hca72f7f_0
  cryptography       pkgs/main/osx-64::cryptography-36.0.0-py39hf6deb26_0
  idna               pkgs/main/noarch::idna-3.3-pyhd3eb1b0_0
  libcxx             pkgs/main/osx-64::libcxx-12.0.0-h2f01273_0
  libffi             pkgs/main/osx-64::libffi-3.3-hb1e8313_2
  ncurses            pkgs/main/osx-64::ncurses-6.3-hca72f7f_2
  openssl            pkgs/main/osx-64::openssl-1.1.1n-hca72f7f_0
  pip                pkgs/main/osx-64::pip-21.2.4-py39hecd8cb5_0
  pycosat            pkgs/main/osx-64::pycosat-0.6.3-py39h9ed2024_0
  pycparser          pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
  pyopenssl          pkgs/main/noarch::pyopenssl-22.0.0-pyhd3eb1b0_0
  pysocks            pkgs/main/osx-64::pysocks-1.7.1-py39hecd8cb5_0
  python             pkgs/main/osx-64::python-3.9.12-hdfd78df_0
  python.app         pkgs/main/osx-64::python.app-3-py39hca72f7f_0
  readline           pkgs/main/osx-64::readline-8.1.2-hca72f7f_1
  requests           pkgs/main/noarch::requests-2.27.1-pyhd3eb1b0_0
  ruamel_yaml        pkgs/main/osx-64::ruamel_yaml-0.15.100-py39h9ed2024_0
  setuptools         pkgs/main/osx-64::setuptools-61.2.0-py39hecd8cb5_0
  six                pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
  sqlite             pkgs/main/osx-64::sqlite-3.38.2-h707629a_0
  tk                 pkgs/main/osx-64::tk-8.6.11-h7bc2e8c_0
  tqdm               pkgs/main/noarch::tqdm-4.63.0-pyhd3eb1b0_0
  tzdata             pkgs/main/noarch::tzdata-2022a-hda174b7_0
  urllib3            pkgs/main/noarch::urllib3-1.26.8-pyhd3eb1b0_0
  wheel              pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0
  xz                 pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
  yaml               pkgs/main/osx-64::yaml-0.2.5-haf1e3a3_0
  zlib               pkgs/main/osx-64::zlib-1.2.12-h4dc903c_1


Preparing transaction: ...working... done
Executing transaction: ...working... 
done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /private/tmp/RtmpIimNYw/file35a541c2ecb9/1.16.0/basilisk.utils/1.16.0/test

  added / updated specs:
    - python=3.9.12


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    bzip2-1.0.8                |       h10d778d_5         125 KB  conda-forge
    ca-certificates-2024.2.2   |       h8857fd0_0         152 KB  conda-forge
    libffi-3.4.2               |       h0d85af4_5          50 KB  conda-forge
    libsqlite-3.45.3           |       h92b6c6a_0         881 KB  conda-forge
    libzlib-1.2.13             |       h8a1eda9_5          58 KB  conda-forge
    ncurses-6.5                |       h5846eda_0         804 KB  conda-forge
    openssl-3.3.0              |       hd75f5a5_0         2.4 MB  conda-forge
    pip-24.0                   |     pyhd8ed1ab_0         1.3 MB  conda-forge
    python-3.9.12              |h1cc4136_1_cpython        12.9 MB  conda-forge
    readline-8.2               |       h9e318b2_1         250 KB  conda-forge
    setuptools-69.5.1          |     pyhd8ed1ab_0         490 KB  conda-forge
    sqlite-3.45.3              |       h7461747_0         880 KB  conda-forge
    tk-8.6.13                  |       h1abcd95_1         3.1 MB  conda-forge
    tzdata-2024a               |       h0c530f3_0         117 KB  conda-forge
    wheel-0.43.0               |     pyhd8ed1ab_1          57 KB  conda-forge
    xz-5.2.6                   |       h775f41a_0         233 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        23.7 MB

The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /private/tmp/RtmpIimNYw/file35a541c2ecb9/1.16.0/basilisk.utils/1.16.0/test

  added / updated specs:
    - pandas=1.4.3
    - python=3.9.12


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    libblas-3.9.0              |22_osx64_openblas          14 KB  conda-forge
    libcblas-3.9.0             |22_osx64_openblas          14 KB  conda-forge
    libcxx-17.0.6              |       h88467a6_0         1.2 MB  conda-forge
    libgfortran-5.0.0          |13_2_0_h97931a8_3         108 KB  conda-forge
    libgfortran5-13.2.0        |       h2873a65_3         1.5 MB  conda-forge
    liblapack-3.9.0            |22_osx64_openblas          14 KB  conda-forge
    libopenblas-0.3.27         |openmp_hfef2a42_0         5.8 MB  conda-forge
    llvm-openmp-18.1.5         |       h39e0ece_0         293 KB  conda-forge
    numpy-1.26.4               |   py39h28c39a1_0         6.2 MB  conda-forge
    pandas-1.4.3               |   py39hf72b562_0        11.9 MB  conda-forge
    python-dateutil-2.9.0      |     pyhd8ed1ab_0         218 KB  conda-forge
    python_abi-3.9             |           4_cp39           6 KB  conda-forge
    pytz-2024.1                |     pyhd8ed1ab_0         184 KB  conda-forge
    six-1.16.0                 |     pyh6c4a22f_0          14 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        27.3 MB

The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-22_osx64_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-22_osx64_openblas
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
  liblapack          conda-forge/osx-64::liblapack-3.9.0-22_osx64_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.27-openmp_hfef2a42_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.5-h39e0ece_0
  numpy              conda-forge/osx-64::numpy-1.26.4-py39h28c39a1_0
  pandas             conda-forge/osx-64::pandas-1.4.3-py39hf72b562_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0
  python_abi         conda-forge/osx-64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0



Downloading and Extracting Packages

llvm-openmp-18.1.5   | 293 KB    |            |   0% 
llvm-openmp-18.1.5   | 293 KB    | 5          |   5% 
llvm-openmp-18.1.5   | 293 KB    | ########## | 100% 
llvm-openmp-18.1.5   | 293 KB    | ########## | 100% 

pytz-2024.1          | 184 KB    |            |   0% 
pytz-2024.1          | 184 KB    | ########## | 100% 
pytz-2024.1          | 184 KB    | ########## | 100% 

liblapack-3.9.0      | 14 KB     |            |   0% 
liblapack-3.9.0      | 14 KB     | ########## | 100% 
liblapack-3.9.0      | 14 KB     | ########## | 100% 

pandas-1.4.3         | 11.9 MB   |            |   0% 
pandas-1.4.3         | 11.9 MB   |            |   0% 
pandas-1.4.3         | 11.9 MB   | #3         |  14% 
pandas-1.4.3         | 11.9 MB   | ##8        |  29% 
pandas-1.4.3         | 11.9 MB   | ####2      |  42% 
pandas-1.4.3         | 11.9 MB   | #####6     |  57% 
pandas-1.4.3         | 11.9 MB   | #######1   |  72% 
pandas-1.4.3         | 11.9 MB   | ########6  |  87% 
pandas-1.4.3         | 11.9 MB   | ########## | 100% 

libopenblas-0.3.27   | 5.8 MB    |            |   0% 
libopenblas-0.3.27   | 5.8 MB    | #2         |  12% 
libopenblas-0.3.27   | 5.8 MB    | ####2      |  43% 
libopenblas-0.3.27   | 5.8 MB    | #######3   |  74% 
libopenblas-0.3.27   | 5.8 MB    | ########## | 100% 

libgfortran-5.0.0    | 108 KB    |            |   0% 
libgfortran-5.0.0    | 108 KB    | ########## | 100% 
libgfortran-5.0.0    | 108 KB    | ########## | 100% 

python_abi-3.9       | 6 KB      |            |   0% 
python_abi-3.9       | 6 KB      | ########## | 100% 
python_abi-3.9       | 6 KB      | ########## | 100% 

numpy-1.26.4         | 6.2 MB    |            |   0% 
numpy-1.26.4         | 6.2 MB    | 6          |   7% 
numpy-1.26.4         | 6.2 MB    | ###4       |  35% 
numpy-1.26.4         | 6.2 MB    | ######3    |  63% 
numpy-1.26.4         | 6.2 MB    | #########2 |  92% 
numpy-1.26.4         | 6.2 MB    | ########## | 100% 

libgfortran5-13.2.0  | 1.5 MB    |            |   0% 
libgfortran5-13.2.0  | 1.5 MB    | ######3    |  64% 
libgfortran5-13.2.0  | 1.5 MB    | ########## | 100% 

six-1.16.0           | 14 KB     |            |   0% 
six-1.16.0           | 14 KB     | ########## | 100% 

libblas-3.9.0        | 14 KB     |            |   0% 
libblas-3.9.0        | 14 KB     | ########## | 100% 
libblas-3.9.0        | 14 KB     | ########## | 100% 

libcblas-3.9.0       | 14 KB     |            |   0% 
libcblas-3.9.0       | 14 KB     | ########## | 100% 
libcblas-3.9.0       | 14 KB     | ########## | 100% 

python-dateutil-2.9. | 218 KB    |            |   0% 
python-dateutil-2.9. | 218 KB    | ########## | 100% 
python-dateutil-2.9. | 218 KB    | ########## | 100% 

libcxx-17.0.6        | 1.2 MB    |            |   0% 
libcxx-17.0.6        | 1.2 MB    | #######9   |  80% 
libcxx-17.0.6        | 1.2 MB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.16.0

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.16.0

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.9.12
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-22_osx64_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-22_osx64_openblas
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
  liblapack          conda-forge/osx-64::liblapack-3.9.0-22_osx64_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.27-openmp_hfef2a42_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.5-h39e0ece_0
  numpy              conda-forge/osx-64::numpy-1.26.4-py39h28c39a1_0
  pandas             conda-forge/osx-64::pandas-1.4.3-py39hf72b562_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  python_abi         conda-forge/osx-64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A

  added / updated specs:
    - pandas=1.4.3
    - python-dateutil=2.8.2
    - python=3.9.12
    - pytz=2022.2.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-22_osx64_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-22_osx64_openblas
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
  liblapack          conda-forge/osx-64::liblapack-3.9.0-22_osx64_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.27-openmp_hfef2a42_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.5-h39e0ece_0
  numpy              conda-forge/osx-64::numpy-1.26.4-py39h28c39a1_0
  pandas             conda-forge/osx-64::pandas-1.4.3-py39hf72b562_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
  python_abi         conda-forge/osx-64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - python=3.9.12


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-h10d778d_5
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.2.2-h8857fd0_0
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libsqlite          conda-forge/osx-64::libsqlite-3.45.3-h92b6c6a_0
  libzlib            conda-forge/osx-64::libzlib-1.2.13-h8a1eda9_5
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0
  openssl            conda-forge/osx-64::openssl-3.3.0-hd75f5a5_0
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.9.12-h1cc4136_1_cpython
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1
  setuptools         conda-forge/noarch::setuptools-69.5.1-pyhd8ed1ab_0
  sqlite             conda-forge/osx-64::sqlite-3.45.3-h7461747_0
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



# All requested packages already installed.

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /Users/biocbuild/bbs-3.19-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B

  added / updated specs:
    - pandas=1.4.2
    - python-dateutil=2.8.1
    - python=3.9.12
    - pytz=2022.1


The following NEW packages will be INSTALLED:

  libblas            conda-forge/osx-64::libblas-3.9.0-22_osx64_openblas
  libcblas           conda-forge/osx-64::libcblas-3.9.0-22_osx64_openblas
  libcxx             conda-forge/osx-64::libcxx-17.0.6-h88467a6_0
  libgfortran        conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
  libgfortran5       conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
  liblapack          conda-forge/osx-64::liblapack-3.9.0-22_osx64_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.27-openmp_hfef2a42_0
  llvm-openmp        conda-forge/osx-64::llvm-openmp-18.1.5-h39e0ece_0
  numpy              conda-forge/osx-64::numpy-1.26.4-py39h28c39a1_0
  pandas             conda-forge/osx-64::pandas-1.4.2-py39hf72b562_2
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  python_abi         conda-forge/osx-64::python_abi-3.9-4_cp39
  pytz               conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done

Example timings

basilisk.Rcheck/basilisk-Ex.timings

nameusersystemelapsed
BasiliskEnvironment-class0.0030.0000.004
PyPiLink000
basiliskOptions0.0000.0000.001
basiliskStart357.280 48.411447.822
configureBasiliskEnv0.0010.0000.000
createLocalBasiliskEnv119.938 21.714164.958
listPackages0.5710.2821.149
obtainEnvironmentPath0.0030.0020.005
setupBasiliskEnv0.0030.0020.005
useBasiliskEnv0.9330.3891.425