Multiple platform build/check report for BioC 3.19 - BUILD results for annmap on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4676
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences"	4414
merida1	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4441
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences"	4417
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the annmap package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/annmap.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

Summary

Package: annmap

Version: 1.45.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annmap

StartedAt: 2024-03-01 17:04:06 -0500 (Fri, 01 Mar 2024)

EndedAt: 2024-03-01 17:04:23 -0500 (Fri, 01 Mar 2024)

EllapsedTime: 17.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data annmap
###
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* checking for file ‘annmap/DESCRIPTION’ ... OK
* preparing ‘annmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘annmap’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RMySQL/libs/RMySQL.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RMySQL/libs/RMySQL.so, 0x0006): Library not loaded: '@loader_path/../../../../opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/mysql/8.1.0/lib/libmysqlclient.22.dylib'
  Reason: tried: '/usr/local/Cellar/mysql/8.1.0/lib/../../../../opt/openssl@3/lib/libssl.3.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libssl.3.dylib' (no such file), '/usr/local/jdk-21.jdk/Contents/Home/lib/server/libssl.3.dylib' (no such file)
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘annmap’
* removing ‘/private/tmp/RtmpXwmwHA/Rinst76e2558f2174/annmap’
      -----------------------------------
ERROR: package installation failed