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This page was generated on 2024-05-09 11:40:25 -0400 (Thu, 09 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4748
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4484
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4514
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2173/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TNBC.CMS 1.20.0  (landing page)
Doyeong Yu
Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/TNBC.CMS
git_branch: RELEASE_3_19
git_last_commit: 4bd5498
git_last_commit_date: 2024-04-30 11:13:35 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for TNBC.CMS on lconway


To the developers/maintainers of the TNBC.CMS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TNBC.CMS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TNBC.CMS
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TNBC.CMS
StartedAt: 2024-05-08 18:40:03 -0400 (Wed, 08 May 2024)
EndedAt: 2024-05-08 18:41:00 -0400 (Wed, 08 May 2024)
EllapsedTime: 57.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TNBC.CMS
###
##############################################################################
##############################################################################


* checking for file ‘TNBC.CMS/DESCRIPTION’ ... OK
* preparing ‘TNBC.CMS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TNBC.CMS.rnw’ using knitr

Quitting from lines  at lines 212-215 [gsa] (TNBC.CMS.rnw)
Error: processing vignette 'TNBC.CMS.rnw' failed with diagnostics:
Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct; use a method-specific parameter object (see '?gsva').
--- failed re-building ‘TNBC.CMS.rnw’

SUMMARY: processing the following file failed:
  ‘TNBC.CMS.rnw’

Error: Vignette re-building failed.
Execution halted