Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-18 11:37:08 -0400 (Sat, 18 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4515 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1467/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OmnipathR 3.12.0 (landing page) Denes Turei
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the OmnipathR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OmnipathR |
Version: 3.12.0 |
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL OmnipathR |
StartedAt: 2024-05-17 16:20:39 -0400 (Fri, 17 May 2024) |
EndedAt: 2024-05-17 16:21:23 -0400 (Fri, 17 May 2024) |
EllapsedTime: 44.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'OmnipathR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-05-17 16:21:18] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-17 16:21:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:18] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-17 16:21:18] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-17 16:21:18] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-17 16:21:18] [TRACE] [OmnipathR] Contains 1 files. [2024-05-17 16:21:18] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-17 16:21:18] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-17 16:21:18] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:18] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-17 16:21:19] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-05-17 16:21:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-17 16:21:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-17 16:21:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-17 16:21:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:19] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-17 16:21:19] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:19] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-05-17 16:21:21] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-17 16:21:21] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:21] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Contains 1 files. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-17 16:21:21] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:21] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-05-17 16:21:21] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-17 16:21:21] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:21] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-17 16:21:21] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:21] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-17 16:21:21] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:21] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.19-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-17 16:21:21] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-17 16:21:21] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)