Back to Multiple platform build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJK[L]MNOPQRSTUVWXYZ

This page was generated on 2023-11-02 11:40:51 -0400 (Thu, 02 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4729
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4463
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4478
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1096/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LineagePulse 1.22.0  (landing page)
David S Fischer
Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023)
git_url: https://git.bioconductor.org/packages/LineagePulse
git_branch: RELEASE_3_18
git_last_commit: ca1332d
git_last_commit_date: 2023-10-24 11:01:44 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.6.5 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for LineagePulse on kunpeng2


To the developers/maintainers of the LineagePulse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LineagePulse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: LineagePulse
Version: 1.22.0
Command: /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data LineagePulse
StartedAt: 2023-11-02 02:40:32 -0000 (Thu, 02 Nov 2023)
EndedAt: 2023-11-02 02:40:33 -0000 (Thu, 02 Nov 2023)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data LineagePulse
###
##############################################################################
##############################################################################


* checking for file ‘LineagePulse/DESCRIPTION’ ... OK
* preparing ‘LineagePulse’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘LineagePulse’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in '/home/biocbuild/tmp/Rtmp9m5Lea/Rbuild3c006529c65898/LineagePulse/R' missing from 'Collate' field:
  zzz.R
ERROR: unable to collate and parse R files for package ‘LineagePulse’
* removing ‘/home/biocbuild/tmp/Rtmp9m5Lea/Rinst3c00652acf41/LineagePulse’
      -----------------------------------
ERROR: package installation failed